| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,840,823 – 6,840,918 |
| Length | 95 |
| Max. P | 0.760805 |
| Location | 6,840,823 – 6,840,918 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 85.54 |
| Shannon entropy | 0.27640 |
| G+C content | 0.42917 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -18.33 |
| Energy contribution | -19.05 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6840823 95 + 22422827 CCAUGGCAAAAGUUUAUUAUGCAUGACGUUAAGUCCUGCACUUAAGUGCCUGUUAUCGAUAUGUCGAACGGAGCAUGAAUGCGUAAUGCCAAGCC---- ...(((((........((((((((....((((((.....))))))((((((((..((((....)))))))).))))..)))))))))))))....---- ( -26.70, z-score = -1.96, R) >droSim1.chrX 5370660 95 + 17042790 CCAUGGCAAAAGUUUAUUAUGCAUGACGUUAAGUCCUGCACUUAAGUGCCUGUUAUCGAUAUGUCGAACGGAGCAUGAAUGCGUAAUGCCAAGCC---- ...(((((........((((((((....((((((.....))))))((((((((..((((....)))))))).))))..)))))))))))))....---- ( -26.70, z-score = -1.96, R) >droSec1.super_24 74444 95 + 912625 CCAUGGCAAAAGUUUAUUAUGCAUGACGUUAAGUCCUGCACUUAAGUGCCUGUUAUCGAUAUGUCGAACGGAGCAUGAAUGCGUAAUGCCAAGCC---- ...(((((........((((((((....((((((.....))))))((((((((..((((....)))))))).))))..)))))))))))))....---- ( -26.70, z-score = -1.96, R) >droYak2.chrX 7258779 95 - 21770863 CCAUGCCAAAAGUUUAUUAUGCAUGACGUUAAGUCCUGCACUUAAAUGCCUGUUAUCGAUAUGUCGAACGGCGCAUGAAUGCGUAAUGCCAAGCC---- .(((((.....(((((...((((.(((.....))).))))..)))))(((.((..((((....))))))))))))))..................---- ( -23.90, z-score = -1.31, R) >droEre2.scaffold_4690 15768598 95 + 18748788 CCAUGCAAAAAGUUUAUUAUGCAUGACGUUAAGUCCUGCAGUUAAGUGCCUGUUAUCGAUAUGUCGAACGGAGCAUGAAUGCGUAAUGCCAAGCC---- ..(((((......(((...((((.(((.....))).))))..)))((((((((..((((....)))))))).))))...)))))...........---- ( -24.30, z-score = -1.62, R) >droAna3.scaffold_13117 1701685 88 - 5790199 -------CCUGCUUUAUUAUGUAUGGUUUG----CUUGCAUUUAAGUGCCAGUUAUCGAUAUGUCGAAUGAAGCAUGAAUCCUUAAUGUCCUACAGGAU -------..(((((((((((((((.(...(----((.((((....)))).)))...).))))))..)))))))))............((((....)))) ( -22.10, z-score = -2.00, R) >consensus CCAUGGCAAAAGUUUAUUAUGCAUGACGUUAAGUCCUGCACUUAAGUGCCUGUUAUCGAUAUGUCGAACGGAGCAUGAAUGCGUAAUGCCAAGCC____ ..............(((((((((((((.....)))..........((((((((..((((....)))))))).))))..))))))))))........... (-18.33 = -19.05 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:24 2011