| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,837,613 – 6,837,713 |
| Length | 100 |
| Max. P | 0.865277 |
| Location | 6,837,613 – 6,837,713 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 67.11 |
| Shannon entropy | 0.52850 |
| G+C content | 0.41866 |
| Mean single sequence MFE | -29.26 |
| Consensus MFE | -11.70 |
| Energy contribution | -14.06 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6837613 100 - 22422827 ---------------UAUGUCUGUA-CAUGUGUAACUACUAUGCUCCCAAGUGAAAUGAGAUAACUGCCUUCGUUUCUGGGGGCAAGGGAAUAUGUUUCCUGGUAUUUAAGCACAG-- ---------------..........-..(((((((.((((.((((((((...((((((((.........)))))))))))))))).(((((.....))))))))).))..))))).-- ( -29.80, z-score = -2.09, R) >droSim1.chrX 5367465 93 - 17042790 ---------------------CCUG-UAUGUGUAACUACUAUGCUCCCAAGUGAAAUGAGAUAACUGCUCUCAUUUCUGGUGGC-AGGGAAUAUGUUUCCUGGUAUUUAAGCACAG-- ---------------------....-..(((((((.((((.(((..(((...(((((((((.......))))))))))))..))-)(((((.....))))))))).))..))))).-- ( -29.10, z-score = -2.88, R) >droSec1.super_24 71379 93 - 912625 ---------------------UCUG-UAUGUGUAACUACUAUGCUCCCAAGUGAAAUGAGAUAACUGCUCUCAUUUCUGGUGGC-AGGGAAUAUGUUUCCUGGUAUUUAAGCGCAG-- ---------------------.(((-(..((.(((.((((.(((..(((...(((((((((.......))))))))))))..))-)(((((.....))))))))).))).))))))-- ( -29.00, z-score = -2.89, R) >droYak2.chrX 7255077 116 + 21770863 UAUAUACUAUAUAUACUAUAUAGUA-UGUGUGUGCAUAGUAUGCUGCCAAGUGAAAUGAGAUAACUGCUGUCGUUACUGGAGAA-GCAGAACAUGUUUGCUGGCAUUUAAACACACAG .((((((((((((...)))))))))-)))(((((..(((.(((((.(((.((((.....((((.....)))).)))))))...(-(((((.....))))))))))))))..))))).. ( -33.10, z-score = -1.75, R) >droEre2.scaffold_4690 15765375 91 - 18748788 -------------------UCCGUACUAGAUGUACUCACUAUGCUGCCAAGUGAAAUG-----GUUCCUGGGAAAACUGGGAAA-AGCGUACAUGUUGCCUGGUAUGUGCACACAG-- -------------------..(((((((((((((((((((.((....)))))))....-----.((((..(.....)..)))).-...)))))).....)))))))).........-- ( -25.30, z-score = -0.81, R) >consensus _____________________CGUA_UAUGUGUAACUACUAUGCUCCCAAGUGAAAUGAGAUAACUGCUCUCAUUUCUGGGGGC_AGGGAAUAUGUUUCCUGGUAUUUAAGCACAG__ ............................(((((.......(((((.(((...(((((((((.......)))))))))))).....((((((....)))))))))))....)))))... (-11.70 = -14.06 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:24 2011