| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,837,432 – 6,837,541 |
| Length | 109 |
| Max. P | 0.755635 |
| Location | 6,837,432 – 6,837,541 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 73.63 |
| Shannon entropy | 0.46427 |
| G+C content | 0.39224 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -10.23 |
| Energy contribution | -9.58 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6837432 109 + 22422827 AGAUUGGCUGACAAUUUCCUUGAUUGCCUUGCCAACUUGAUGCUCUUUUCAACG--------AAAAGCGUAUGCUGUUUUCCAAAUGAAAUCAAAUUUGCUU-GCUAAUGAUUAUCCC ..((((((...(((.....((((((...(((..(((...((((.((((((...)--------))))).))))...)))...)))....))))))..)))...-))))))......... ( -18.00, z-score = -0.36, R) >droSim1.chrX 5367278 117 + 17042790 AGAUUGGCUGACAAUUUCCUUGAUUGCCUUGCCAACUUGAUGCUCUCUUCAACUGGCGUUCUAAAAGCUUAUGCUGUUUUCCAAAUUAAAUGAAAUUUGUUU-GCCAAUGAUUAUCCC ..((((((.(((((((((.((((((.....((((..((((........)))).))))........(((....)))........))))))..)))).))))).-))))))......... ( -26.50, z-score = -2.80, R) >droSec1.super_24 71194 115 + 912625 AGAUUGGCUGACAAUUUCCUUGAUUGCCUUGCCAACUUGAUGCUCUUUUCAACUGGCGUUCUAAAAGCUUAUGCUGUU--CCAAAUUAAAUGAAAUUUGUUU-GCCAAUGAUUAUCCC ..((((((.(((((((((.((((((.....((((..((((........)))).))))........(((....)))...--...))))))..)))).))))).-))))))......... ( -26.50, z-score = -2.77, R) >droYak2.chrX 7254902 97 - 21770863 CGAUUGGCUGACAAUUUGCCAGAUUGCUUGGCCAACUUGAUGCUCUCUUUAGCU---------------------GGCAUACGAAUGAAUUGAAUUUUGUUUUGCCAGUGAUUAUCCC ((((((((..((((((.....))))).)..))))).)))............(((---------------------((((.(((((..........)))))..)))))))......... ( -26.80, z-score = -2.47, R) >droEre2.scaffold_4690 15765211 97 + 18748788 AGAUUGGCUGACAAUUUUCCG---------------UUGAU----UGCUCAGCUGGC-UUCUAAAAGCUUGUGCUGUCUUCCAAAUGAAAUGAAAUUUGUUU-GCCAGUGAUUAGCCC ..((((((.(((((.((((((---------------((...----....((((.(((-((....)))))...)))).......))))....)))).))))).-))))))......... ( -26.84, z-score = -2.33, R) >consensus AGAUUGGCUGACAAUUUCCUUGAUUGCCUUGCCAACUUGAUGCUCUCUUCAACUGGC_UUCUAAAAGCUUAUGCUGUUUUCCAAAUGAAAUGAAAUUUGUUU_GCCAAUGAUUAUCCC ..((((((.(((........................((((........)))).............(((....))))))...(((((........)))))....))))))......... (-10.23 = -9.58 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:23 2011