| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,831,189 – 6,831,258 |
| Length | 69 |
| Max. P | 0.894080 |
| Location | 6,831,189 – 6,831,258 |
|---|---|
| Length | 69 |
| Sequences | 12 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 86.41 |
| Shannon entropy | 0.27006 |
| G+C content | 0.30612 |
| Mean single sequence MFE | -13.26 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.43 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6831189 69 + 22422827 -----CCUUGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA-UAUUU--- -----..........((((((((((.(((.(((((((....)))))))))).))..)))))))).....-.....--- ( -11.20, z-score = -1.20, R) >droSim1.chrX 5361121 69 + 17042790 -----CCUUGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA-UAUUU--- -----..........((((((((((.(((.(((((((....)))))))))).))..)))))))).....-.....--- ( -11.20, z-score = -1.20, R) >droSec1.super_24 65040 69 + 912625 -----CCUUGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA-UAUUU--- -----..........((((((((((.(((.(((((((....)))))))))).))..)))))))).....-.....--- ( -11.20, z-score = -1.20, R) >droYak2.chrX 7248196 69 - 21770863 -----UCUGGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA-UAUUU--- -----..........((((((((((.(((.(((((((....)))))))))).))..)))))))).....-.....--- ( -11.20, z-score = -0.78, R) >droEre2.scaffold_4690 15759092 69 + 18748788 -----CCUUGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA-UAUUU--- -----..........((((((((((.(((.(((((((....)))))))))).))..)))))))).....-.....--- ( -11.20, z-score = -1.20, R) >droAna3.scaffold_13117 1687617 72 - 5790199 -----CCUCGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAGGUCCUAGAUAU- -----....(((....(((((((((.....)))))))))..((((((........))))))....))).........- ( -13.90, z-score = -2.00, R) >dp4.chrXL_group1a 774170 69 + 9151740 -----CCUUGCCAAAUUGUUAUGCAAAAUUUGCAUAAUACAUUAUGUAAUUAUGGACGUGACAAAAGUA-UAUUU--- -----..........(((((((((.....((((((((....)))))))).....).)))))))).....-.....--- ( -13.60, z-score = -1.55, R) >droPer1.super_26 885552 69 + 1349181 -----CCUUGCCAAAUUGUUAUGCAAAAUUUGCAUAAUACAUUAUGUAAUUAUGGACGUGACAAAAGUA-UAUUU--- -----..........(((((((((.....((((((((....)))))))).....).)))))))).....-.....--- ( -13.60, z-score = -1.55, R) >droWil1.scaffold_180777 2923213 72 + 4753960 -----UCAUGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA-UUUCUAUU -----(((((......(((((((((.....)))))))))..(((((....))))).)))))........-........ ( -12.50, z-score = -1.39, R) >droVir3.scaffold_12928 7580060 74 - 7717345 CCCUGCUGCGGCAACUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGCAAUUAUGAACGUGACAAACGUCUCCUA---- ...(((....)))..((((((((((.(((.(((((((....)))))))))).))..))))))))..........---- ( -15.10, z-score = -1.64, R) >droMoj3.scaffold_6359 3067757 74 - 4525533 CCCUGCUGUGGCGACUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGCAAUUAUGAACGUGACAAAAGUCUCCUU---- .........((.(((((((((((((.(((.(((((((....)))))))))).))..)))))))..)))).))..---- ( -19.10, z-score = -3.20, R) >droGri2.scaffold_15203 10184726 74 - 11997470 CCCUGCUGUGGCAACUUGUUAUGAAAAAUCUGCAUAAUACAUUAUGCAAUUAUGAACGUGACAAAAGUCUCAUU---- ......((.(((...((((((((.......(((((((....)))))))........))))))))..))).))..---- ( -15.36, z-score = -1.91, R) >consensus _____CCUUGCCAAAUUGUUAUGCAAAAUCUGCAUAAUACAUUAUGUAAUUAUGAACGUGACAAAAGUA_UAUUU___ ...............((((((((((.(((.(((((((....)))))))))).))..)))))))).............. (-11.54 = -11.43 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:22 2011