| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,814,958 – 6,815,054 |
| Length | 96 |
| Max. P | 0.985545 |
| Location | 6,814,958 – 6,815,054 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.03 |
| Shannon entropy | 0.28455 |
| G+C content | 0.36259 |
| Mean single sequence MFE | -19.44 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.13 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.985545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6814958 96 - 22422827 --------UGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGA-CACGGCG--------------- --------.((..............((.((....((((((((((..........)))))))))).....)).))...((((........))))....-....)).--------------- ( -17.60, z-score = -2.46, R) >droPer1.super_26 862658 100 - 1349181 ----GUUUUGCACUUAAUACCAUUUUCACUCUCUUUAAUGAUGCUCAAUUUUGUGCAUCAUUAAUCUUUAGCGAUUUUCAGAUUUUCCGUUGACUGA-GGCGGCG--------------- ----...((((.((((..................((((((((((.((....)).))))))))))...((((((..............)))))).)))-)))))..--------------- ( -20.54, z-score = -1.86, R) >dp4.chrXL_group1a 755293 100 - 9151740 ----GUUUUGCACUUAAUACCAUUUUCACUCUCUUUAAUGAUGCUCAAUUUUGUGCAUCAUUAAUCUUUAGCGAUUUUCAGAUUUUCCGUUGACUGA-GGCGGCG--------------- ----...((((.((((..................((((((((((.((....)).))))))))))...((((((..............)))))).)))-)))))..--------------- ( -20.54, z-score = -1.86, R) >droAna3.scaffold_13117 1668651 98 + 5790199 ------UUUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUAAGCGAUUUUCAGCUUUGCCGUUGACUGA-CAUAACG--------------- ------...................((.(((...((((((((((..........))))))))))....))).))...(((((......)))))....-.......--------------- ( -18.00, z-score = -2.87, R) >droEre2.scaffold_4690 15740667 96 - 18748788 --------UGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGA-CACGGCG--------------- --------.((..............((.((....((((((((((..........)))))))))).....)).))...((((........))))....-....)).--------------- ( -17.60, z-score = -2.46, R) >droYak2.chrX 7231710 96 + 21770863 --------UGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGA-CACGGCG--------------- --------.((..............((.((....((((((((((..........)))))))))).....)).))...((((........))))....-....)).--------------- ( -17.60, z-score = -2.46, R) >droSec1.super_24 30368 96 - 912625 --------UGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGA-CACGGCG--------------- --------.((..............((.((....((((((((((..........)))))))))).....)).))...((((........))))....-....)).--------------- ( -17.60, z-score = -2.46, R) >droSim1.chrX_random 2189557 96 - 5698898 --------UGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGA-CACGGCG--------------- --------.((..............((.((....((((((((((..........)))))))))).....)).))...((((........))))....-....)).--------------- ( -17.60, z-score = -2.46, R) >droVir3.scaffold_12928 7554879 97 + 7717345 -----CUUUGCACCUAAUUCCAUUUUCACUUUCUUUGAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUAAGCGAUUUUCAGCUUUGACGCUGACACACAGCA------------------ -----...(((..............((.(((...((((((((((..........))))))))))....))).))...(((((......)))))......)))------------------ ( -23.00, z-score = -4.27, R) >droGri2.scaffold_15203 10163618 98 + 11997470 ------CUUGCACCUAAUUCCAUUUUCACUUUCUUUGAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUAAGCGAUUUUCAGCUUUGACGCUGACACACACAGCU---------------- ------...((..............((.(((...((((((((((..........))))))))))....))).))...(((((......)))))........)).---------------- ( -22.40, z-score = -4.10, R) >droMoj3.scaffold_6359 3042187 97 + 4525533 -----CUUUGCACCUAAUUCCAUUUUCACUUUCUUUGAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUAAGCGCUUUCCAGCAUUGACGCUGACGCACA-CAC----------------- -----...(((.................(((...((((((((((..........))))))))))....))).......((((......))))..)))..-...----------------- ( -20.30, z-score = -3.45, R) >droWil1.scaffold_180777 2900053 120 - 4753960 GUGUGCUUUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUACCAGUGACUGACAACAACAACAACAACAAAGACG ..((((...))))............(((((....((((((((((..........)))))))))).....(((........))).....)))))........................... ( -20.50, z-score = -1.80, R) >consensus ______UUUGCACUUAAUUCCAUUUUCACUUUCUUUAAUGAUGCUCAAUUUUUUGCAUCAUUAAUCUUUAGCGAUUUUCAGCUUUGCCACUGACUGA_CACGGCG_______________ .........................((.((....((((((((((..........)))))))))).....)).))...((((........))))........................... (-14.24 = -14.13 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:21 2011