Locus 13481

Sequence ID	dm3.chrX
Location	6,810,065 – 6,810,149
Length	84
Max. P	0.589071

overview

Window 0

Location	6,810,065 – 6,810,149
Length	84
Sequences	4
Columns	84
Reading direction	forward
Mean pairwise identity	78.65
Shannon entropy	0.32479
G+C content	0.34667
Mean single sequence MFE	-18.27
Consensus MFE	-10.32
Energy contribution	-12.33
Covariance contribution	2.00
Combinations/Pair	1.14
Mean z-score	-2.00
Structure conservation index	0.56
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.20
SVM RNA-class probability	0.589071
Prediction	RNA
WARNING	Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 6810065 84 + 22422827
UGGGCCAGUAAAAUAAAUUUAAUUUUACGCAGCCAGUGAAUUUUUGCAUGGCAAUGCAGUUUGUAUACAUAUGUACAUUCAUAU
..(((..(((((((.......)))))))...))).(((((...((((((....))))))..((((((....))))))))))).. ( -20.40, z-score =  -1.64, R)
>droYak2.chrX 7226580 68 - 21770863
UGGACCAGUAAAAUAAAUUUUAUUUUACGCACACAGUGAGUUG------GGCAAUGCAGUUUGCAUUCAUUCAU----------
(((((((((((((((.....)))))))).(((...)))...))------)(.(((((.....)))))).)))).---------- ( -12.90, z-score =  -0.87, R)
>droSec1.super_24 23783 73 + 912625
-UGGCCAGUAAAAUAAAUUUCAUUUUACGCAGCCAGUGCAUUUUUGUAUGCCAAUGCAGUUUGCAUACAUUCAU----------
-((((..(((((((.......)))))))...))))(((((...((((((....))))))..)))))........---------- ( -19.90, z-score =  -2.75, R)
>droSim1.chrX 5340296 73 + 17042790
-UGGCCAGUAAAAUAAAUUUCAUUUUACGCAGCCAGUGCAUUUUUGUAUGCCAAUGCAGUUUGCAUACAUUCAU----------
-((((..(((((((.......)))))))...))))(((((...((((((....))))))..)))))........---------- ( -19.90, z-score =  -2.75, R)
>consensus
_GGGCCAGUAAAAUAAAUUUCAUUUUACGCAGCCAGUGAAUUUUUGUAUGCCAAUGCAGUUUGCAUACAUUCAU__________
..(((..(((((((.......)))))))...))).(((((...((((((....))))))..))))).................. (-10.32 = -12.33 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:17 2011