| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,799,744 – 6,799,845 |
| Length | 101 |
| Max. P | 0.606811 |
| Location | 6,799,744 – 6,799,845 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 61.64 |
| Shannon entropy | 0.54803 |
| G+C content | 0.46433 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -10.54 |
| Energy contribution | -10.10 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6799744 101 + 22422827 CUUCACAAUUGAACCCCCCAUGACGCACCAC-----CACCGCCAACAACAACAAAUGUACAAUGGCCAUCUGAUUGCUUGGCCAUUUCCAGCAUUUUGCUCAAGUU .((((....)))).......(((.(((....-----................((((((..((((((((..........))))))))....)))))))))))).... ( -16.25, z-score = -0.25, R) >droSec1.super_24 13414 106 + 912625 CUUCACAAUUGAGCAAAACCCAACCCCCCCUGGACGCACCACCACCAACCAAAAAUAUACAAUGGCCAUCUGAUUGCUUGGCCAUUCCCAGCAUUUCGCUCAAGUU ........((((((.....(((........)))...........................((((((((..........))))))))...........))))))... ( -21.30, z-score = -2.23, R) >droAna3.scaffold_13117 1641932 103 - 5790199 UUUAAAAAUUUGUAGAGAGGAAACCCCCUUAGGAAGAGCGAGUCCUGGUGAAAAUUCCACAAUGGCCGGCUGAUUGCUUGGCUAUUUCACAGAAUUUCCUCAA--- ................(((((((......(((((........)))))(((((.........(((((((((.....)).))))))))))))....)))))))..--- ( -27.50, z-score = -1.06, R) >consensus CUUCACAAUUGAACAAAACAAAACCCCCCAAGGA_GCACCACCACCAACAAAAAAUAUACAAUGGCCAUCUGAUUGCUUGGCCAUUUCCAGCAUUUUGCUCAAGUU ....................................................((((((..((((((((..........))))))))....)))))).......... (-10.54 = -10.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:15 2011