| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,795,125 – 6,795,216 |
| Length | 91 |
| Max. P | 0.627657 |
| Location | 6,795,125 – 6,795,216 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 73.71 |
| Shannon entropy | 0.45377 |
| G+C content | 0.46381 |
| Mean single sequence MFE | -26.34 |
| Consensus MFE | -15.38 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6795125 91 + 22422827 UUACAGUGGAUAAUCGCUGUUGUGAACUCUGCUGUGC-----AACUUUUGUCGCACUUUGCUGUGCAGCUUUAAAAUCGAUUGCGUUGUC---GUCUGA ...(((..(((((.(((.((((........((((..(-----(((....)).((.....))))..))))........)))).))))))))---..))). ( -25.99, z-score = -1.58, R) >droEre2.scaffold_4690 15721427 94 + 18748788 CUACAGUGGAUAAUCGUUGUAGUGAACUCUGCUGGGC-----AACGUGGGUUGCACUUUGCUGUGCAGCUGGGAAAUCGAUUUCGUAGUCGCAGUCUGA .(((((..((........((((......))))...((-----(((....)))))..))..)))))((((((.((...((....))...)).))).))). ( -28.90, z-score = -0.74, R) >droYak2.chrX 7210548 96 - 21770863 CUACAGUGGAUAAUCGCUGCCGUGAACUCUGCUGGGCUCUGUAACUAUGGCUGCACUUUGCUGUGCAGCUGGUAAAUCGAUUUCGUUGUC---GUUCGA ...(((..((...((((....))))..))..))).........(((..((((((((......)))))))))))...((((...((....)---).)))) ( -29.50, z-score = -1.52, R) >droSim1.chrX_random 2185454 91 + 5698898 CUACAGUGGAUAAUCGCUGUUGUGAACUCUGCUGUGC-----AACUUUUGUUGCACUUUGCUGUGCAGCUGGGAAAUCGAUUGCGAUGUC---GUCUGA ...(((..((((.((((.((((....(((.(((((((-----(((....)))))((......))))))).)))....)))).))))))))---..))). ( -31.50, z-score = -3.06, R) >droGri2.scaffold_15203 10138311 86 - 11997470 UUGCAAUUCACAAACGGUUUUUUA-----UGUUGCAC---GAAGCUUUUCCUGCAUUUCGCUGUC--GCUCGAAAAUCGAUUUCAUUGUUG--GCUUG- ...((((....(((((((((((..-----.((.((((---(((((.......))..)))).))).--))..)))))))).)))....))))--.....- ( -15.80, z-score = 0.34, R) >consensus CUACAGUGGAUAAUCGCUGUUGUGAACUCUGCUGGGC_____AACUUUUGUUGCACUUUGCUGUGCAGCUGGAAAAUCGAUUUCGUUGUC___GUCUGA .(((((((((...((((....))))..))))))))).............(((((((......))))))).............................. (-15.38 = -16.30 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:14 2011