| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,765,684 – 6,765,774 |
| Length | 90 |
| Max. P | 0.974222 |
| Location | 6,765,684 – 6,765,774 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 90.96 |
| Shannon entropy | 0.14989 |
| G+C content | 0.43603 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6765684 90 - 22422827 UAUGUAAGUUUGUGUAUCAUUACAAGCAAGGCCAACAAAACACGGCCAUGCACUCUCUAGAGAAAUCCCUCCGUACGCACACAUA-UACAU---- .(((((.((.(((((((........(((.((((..........)))).))).(((....)))..........))))))).))...-)))))---- ( -23.20, z-score = -3.80, R) >droEre2.scaffold_4690 15693869 88 - 18748788 --UGUAAGUUUGUGUGUCAUUACAAGCGAGGCCAACAAAACACGGCCAUGCACUCUCUAGAGAAAACCCUCUGUACGA-CACAUA-UACAUA--- --.....((.((((((((.......(((.((((..........)))).)))......(((((......)))))...))-))))))-.))...--- ( -27.90, z-score = -4.09, R) >droYak2.chrX 7176105 88 + 21770863 --UGUAAGUUUGUGUGUCAUUACAAGCGAGGCCAACAAAACACGGCCAUGCACUCUCUAGAGAAAACCCUCCGUACGC-CAGAUA-UACAUA--- --((((.(((((.(((((.......(((.((((..........)))).))).(((....)))..........).))))-))))).-))))..--- ( -23.80, z-score = -2.72, R) >droSec1.super_4 6149677 92 + 6179234 --UGUCACUUUGUGUAUCAUUACAAGCAAGGCCAACAAAACACGGCCAUGCACUCUCUAGAGAAAACCCUCUGUACGC-CACAUACCAUAUACAU --........(((((((........(((.((((..........)))).)))......(((((......))))).....-........))))))). ( -19.90, z-score = -2.56, R) >droSim1.chrX 5294691 87 - 17042790 --UGUCAGUUUGUGUAUCAUUACAAGCAAGGCCAACAAAACACGGCCAUGCACUCUCUAGAGAAAACCCUCUGUACGC-CACAUA-UACAU---- --.....((.(((((..........(((.((((..........)))).)))......(((((......))))).....-.)))))-.))..---- ( -20.40, z-score = -2.41, R) >consensus __UGUAAGUUUGUGUAUCAUUACAAGCAAGGCCAACAAAACACGGCCAUGCACUCUCUAGAGAAAACCCUCUGUACGC_CACAUA_UACAUA___ ..((((....((((......(((..(((.((((..........)))).))).(((....)))..........)))....))))...))))..... (-16.88 = -17.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:08 2011