| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,755,670 – 6,755,763 |
| Length | 93 |
| Max. P | 0.818562 |
| Location | 6,755,670 – 6,755,763 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 90.35 |
| Shannon entropy | 0.16797 |
| G+C content | 0.50907 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -17.70 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6755670 93 - 22422827 CCUUUCCGUUCGCGACCGCUCGAGAGUGUUCUCCCCUCUCACACUCCCGCUCUCCUUAUCACACUCUUCGUAAACUCUGGAGAUUAAAGAGCA ......((....))...(((((.((((((...........)))))).)..(((((.......((.....)).......))))).....)))). ( -19.34, z-score = -1.26, R) >droSim1.chrX_random 2176497 85 - 5698898 CCUUUCCGUUUGCGACCGCUCGAGAGUGUUCUCCCCUCUCA--------CUCUCCUUAUCACUCUCUUUGUAAACUCUGGAGAUUAAAGAGCA ......((....))...(((((((((((...........))--------)))))........(((((..(....)...))))).....)))). ( -20.80, z-score = -2.22, R) >droSec1.super_4 6139496 85 + 6179234 CCUUUCCGUUUGCGACCGCUCGAGAGUGUUCUCUCCUCUCA--------CUCUCCUUAUCACUCUCUUCGUAAACUCUGGAGAUUAAAGAGCA ......((....))...(((((((((((...........))--------)))))........(((((...........))))).....)))). ( -20.30, z-score = -1.71, R) >droYak2.chrX 7165505 93 + 21770863 CCUUUCCGUUCGCGACCGCUCGAGAGUGUUUUCCCCUCUCACUCGCCCUCUCUCCUUAUCUCACUCUUCGUAAACUCUGGAGAUUAAAGAGCA ......((....))...(((((((((.(......))))))..........(((((.......((.....)).......))))).....)))). ( -19.24, z-score = -1.15, R) >droEre2.scaffold_4690 15683676 93 - 18748788 CCUUUCCGUUCGCGACCGCUCGAGAGUGUUCUCCCCUCUCACUCCCCCUCUCCCCUUAUCUCACUCUUCGUAAACUCUGGAGAUUAAAGAGCA ......((....))...(((((((((.(......))))))........(((((.........................))))).....)))). ( -17.41, z-score = -1.10, R) >consensus CCUUUCCGUUCGCGACCGCUCGAGAGUGUUCUCCCCUCUCAC_C_CCC_CUCUCCUUAUCACACUCUUCGUAAACUCUGGAGAUUAAAGAGCA ......((....))...(((((((((.(......))))))..........(((((.......................))))).....)))). (-17.70 = -17.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:07 2011