| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,753,180 – 6,753,296 |
| Length | 116 |
| Max. P | 0.949715 |
| Location | 6,753,180 – 6,753,296 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 81.93 |
| Shannon entropy | 0.31298 |
| G+C content | 0.40214 |
| Mean single sequence MFE | -32.94 |
| Consensus MFE | -23.88 |
| Energy contribution | -24.88 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6753180 116 - 22422827 UAAAAUUUAAAAUGGGUAGGGCGAUUAAUGAAAUCACCGGGGAUUUUCUAGAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCUCAGGAGAUUUUGGUUGACACCCCGU ...................((.((((.....)))).))((((.((..(((((((((((((((((((..(............)..)))))))))))))).)))))..))..)))).. ( -35.00, z-score = -2.08, R) >droSim1.chrX_random 2174877 96 - 5698898 ------------------CAAUAUUAAAUGAAAUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU--GGAGAUUUUGGUUGACACCCCGU ------------------...................(((((.((..(((....((((.(((((((..(............)..)))))))--.))))...)))..))..))))). ( -25.30, z-score = -1.11, R) >droSec1.super_4 6137122 96 + 6179234 ------------------CAAUAUUUAAUGAAAUCACCGGGGAUUUUCUAUAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCU--GGAGAUUUUGGUUGACACCCCGU ------------------...................(((((.((..(((....((((.(((((((..(............)..)))))))--.))))...)))..))..))))). ( -25.30, z-score = -1.09, R) >droYak2.chrX 7162993 115 + 21770863 UAGAAUGCAAAAUGGUUAUGGUGAUUAAUGAAAUCUCCGGGGAUUUUCUAGAUUUCUUGGGAUUUUUGCAAGCCAGCCAAAGUGGAAAUCUCUGGAGA-UUUGGUUGACACCCCGU ...........((((....((((.(((((.((((((((((((((((((.((....))....(((((.((......)).))))))))))))))))))))-))).))))))))))))) ( -39.40, z-score = -3.09, R) >droEre2.scaffold_4690 15681144 116 - 18748788 CAGAAUUAACAAAAGGUACGGUGAUUAAUGAAAUCUCCGGAGAUUUUCUAGAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCUCUGGAGAUUUUGGUUGACACCCCGU ..............((...((((.((((((((((((((((((((((((..((((.((((.((...)).))))..)))).....))))))))))))))))))).))))))))))).. ( -39.70, z-score = -3.62, R) >consensus _A_AAU__A_AA__G_UACGGUGAUUAAUGAAAUCACCGGGGAUUUUCUAGAUUUCUUGGGAUUUUUGCAAGCCAGUCGAAGUGGAAAUCUC_GGAGAUUUUGGUUGACACCCCGU .....................................(((((.((..((((((((((.((((((((..(............)..)))))))).))))).)))))..))..))))). (-23.88 = -24.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:07 2011