| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,745,009 – 6,745,115 |
| Length | 106 |
| Max. P | 0.543974 |
| Location | 6,745,009 – 6,745,115 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 66.40 |
| Shannon entropy | 0.73719 |
| G+C content | 0.53909 |
| Mean single sequence MFE | -22.74 |
| Consensus MFE | -8.60 |
| Energy contribution | -9.12 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6745009 106 + 22422827 AUCAUCCUGCGACCCACCAGUGAGUGCCGGCACCGCUGUCGCACCUUGUCUCUGCGACUUACCCAGUCCUUUGUGCGUGAGUAUCGUUUCGAUUGCUUUUGUUCCG----- .......((((((.....((((.(((....)))))))))))))....(((...(((((((((((((....))).).)))))..))))...))).............----- ( -24.10, z-score = -0.10, R) >droSim1.chrX_random 2165984 106 + 5698898 AUCAUCCUGCGACCCACCAGUGAGUGCCGGCACCGCUGUCGCACCUUGUCUCUGCGGCUUACCCAGUCCUUUGUGCGUGAGUAUCGUUUCGGUUGCAUUUGUUCCG----- .......(((((((...(((((.(((....)))))))).(((((.......(((.((....)))))......))))).............))))))).........----- ( -30.72, z-score = -0.98, R) >droSec1.super_4 6128125 106 - 6179234 AUCAUCCUGCGACCCACCAGUGAGUGCCGGCACCGCUGUCGCACCUUGUCUCUGCGACUUACCCAGUCCUUUGUGCGUGAGUAUCGUUUCGAUUGCUUAUGUUCCG----- .......((((((.....((((.(((....)))))))))))))............((((.....))))......((((((((((((...))).)))))))))....----- ( -26.40, z-score = -0.77, R) >droYak2.chrX 2711884 105 + 21770863 AUCAUCUUGCGACCCACCAGUGAGUGCCGGCACCGCUGUCGCACCUUGUCCCUGCGACUAACCCAGUCCUUUGUGCGUGAGUAUCGUU-CGAGUGCUUUUCUUUCG----- .......((((((.....((((.(((....))))))))))))).((((..(....((((.....))))....((((....)))).)..-)))).............----- ( -24.50, z-score = -0.09, R) >droEre2.scaffold_4690 15672613 105 + 18748788 AUCAUCCUGCGACCCACCAGUGAGUGCCGGCACCGCUGUCGCACCUUGUCCCUGCGAUUAACCCAGUCCUUUGUGCGUGAGUAUCGUU-AGAGUGCUUUUCUUUCG----- .......((((((.....((((.(((....)))))))))))))...........(((.......((..((((((((....))))....-))))..))......)))----- ( -23.62, z-score = -0.19, R) >droAna3.scaffold_13117 1574649 109 - 5790199 AUCAUUCUCCGACCCACCAGCGAGUGCCGGCACCGCUGUCGCACCCUCUCCCUCCGACUCACCCAGUCCUAUGUCCGUAAGUAUCCACAAUUUCUCUUUAUUUUCUUUC-- ...(((..(.(((....(((((.(((....)))))))).................((((.....))))....))).)..)))...........................-- ( -16.00, z-score = -1.72, R) >droPer1.super_26 619131 110 + 1349181 AUCAUCCUGCGCCCCACCAGCGAGUGUCGCCACCGGUGCCGCACCCUCUCCAUUCGCCUCACACAGUCCUUUGUCCGUGAGUAUCAUU-CUCUAUCUCUGCUUUUGCUCUG ........((.........(((((((..(.....((((...))))..)..)))))))(((((((((....))))..))))).......-..........)).......... ( -19.80, z-score = -0.64, R) >droWil1.scaffold_181096 5919994 83 + 12416693 AUCAUCUUGCGGCCGACCAGCGAAUGUCGUCAUCGUUGCCGUACUCUCUCCAUGCGUUUGCCGCCAUCAUUUGUCCGUAAGUA---------------------------- .....(((((((.(((.((((((.((....))))))))...............(((.....)))......))).)))))))..---------------------------- ( -18.80, z-score = -0.76, R) >droMoj3.scaffold_6473 16876771 87 - 16943266 AUCAUCCUGCGUCCGACCAGCGAAUGUCGCCAGCGCUGUCGUACGCUCUCCAUGCGUCUCAGUCAAUCCUUUGUGCGUAUGUAUCGU------------------------ ........((((.((((.((((..((....)).)))))))).))))....(((((((..(((........))).)))))))......------------------------ ( -24.90, z-score = -2.21, R) >droGri2.scaffold_14853 6993063 85 + 10151454 AUCAUCCUGCGUCCAACCAGCGAAUGCCGUCAACGCUGUCGCACCCUCUCCAUGCGCCUCACCCAAUCCUUUGUGCGUAAGUAUC-------------------------- .......((((..(((.(((((...........))))).((((.........))))..............)))..))))......-------------------------- ( -14.30, z-score = -0.84, R) >anoGam1.chr2L 9186432 89 - 48795086 UUUAUGCUGCGGCCGACGCAAGAGUGUAGGCACCGCUGCCGGACACUUUCCGUGCGAUUGCCACCGUACUAUGGACGUAUGUAUUGCUC---------------------- ...((((((((((...(((((((((((.((((....))))..)))))))...))))...))).((((...))))..))).)))).....---------------------- ( -28.20, z-score = -0.40, R) >triCas2.ChLG4 7746216 102 - 13894384 AUAAUCCUCAAACCCUCCAGAGAAUGUGGAGAUGUCUGUAGAACAGUUUCAGUAAUACUGAAACCUUCCUACGUUUGUAAGAAUUUUUUUACUUUUCUAACG--------- ....((..(((((.(((((.......)))))......((((....(((((((.....)))))))....)))))))))...))....................--------- ( -21.50, z-score = -2.07, R) >consensus AUCAUCCUGCGACCCACCAGCGAGUGCCGGCACCGCUGUCGCACCCUCUCCCUGCGACUCACCCAGUCCUUUGUGCGUAAGUAUCGUU_CG_UUGCUUUU_UU_CG_____ .......(((((.....(((((.(((....))))))))))))).................................................................... ( -8.60 = -9.12 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:06 2011