| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,444,885 – 10,444,978 |
| Length | 93 |
| Max. P | 0.878192 |
| Location | 10,444,885 – 10,444,978 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.90 |
| Shannon entropy | 0.28122 |
| G+C content | 0.46760 |
| Mean single sequence MFE | -30.46 |
| Consensus MFE | -19.82 |
| Energy contribution | -20.82 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10444885 93 + 23011544 ---GGCGGGGUGAACAUCUUGCUCAGCUGGAUUUAAUCAAGAUUUGUUU-GCCCUGCCGCCGAA---CAGUGGCUCGUUUUCACAGAAAACGUUGUAAAA ---(((((((..(((((((((................)))))..)))).-.)))))))((((..---...)))).(((((((...)))))))........ ( -33.79, z-score = -3.09, R) >droAna3.scaffold_12916 14286327 100 + 16180835 GAAGAGAUGGGGCAGAUCAGUUUCAGCUGCAUCUAAUCAAGAUUUUUUCCACCCUCACACAGAAGCGCAGUGGCCCGUUUUCAUUAAGCACAAUCUUAAA ...(((((.((((((((((((....)))).)))).......................(((.........)))))))((((.....))))...)))))... ( -20.90, z-score = -0.46, R) >droEre2.scaffold_4929 11653923 93 - 26641161 ---GGCGGGGUGAACAUCUUGCUCAGCUGGAUUUAAUCAAGAUCUGUUU-GCCCAGCCGCCAAA---CAGUGGCUCGUUUUCACAGAAAGCGUUGUAAAA ---(((.(((..(((((((((................)))))..)))).-.))).)))((((..---...)))).(((((((...)))))))........ ( -30.59, z-score = -1.87, R) >droYak2.chr2L 6849948 93 + 22324452 ---GGCGGGGUGAACAUCUUGCUCAGCUGGAUUUAAUCAAGAUCUGUUU-GCCCUGCCGCCGAA---CAGUGGCUCGUUUUCACAGAAAACUUUGUAAAA ---(((((((..(((((((((................)))))..)))).-.)))))))((((..---...))))..((((((...))))))......... ( -32.19, z-score = -2.78, R) >droSec1.super_3 5872739 93 + 7220098 ---GGCGGGGUGAACAUCUUGCUCAGCUGGAUUUAAUCAAGAUUUGUUU-GCCCUGCCGCCGAA---CAGUGGCUCGUUUUCACAGAAAACGUUGUAAAA ---(((((((..(((((((((................)))))..)))).-.)))))))((((..---...)))).(((((((...)))))))........ ( -33.79, z-score = -3.09, R) >droSim1.chr2L 10238942 93 + 22036055 ---GGCGGGGUGAAAAUCUUGCUCAGCUGGAUUUAAUCAAGAUUUGUUU-GCCCUGCCGCCGAA---CAGUGGCUCGUUUUCACAGAAAACGUUGUAAAA ---(((((((..(((((((((................)))))))..)).-.)))))))((((..---...)))).(((((((...)))))))........ ( -31.49, z-score = -2.52, R) >consensus ___GGCGGGGUGAACAUCUUGCUCAGCUGGAUUUAAUCAAGAUUUGUUU_GCCCUGCCGCCGAA___CAGUGGCUCGUUUUCACAGAAAACGUUGUAAAA ...((((((((((((((((((................)))))..))))).))))))))((((........))))..((((((...))))))......... (-19.82 = -20.82 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:13 2011