| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,734,125 – 6,734,235 |
| Length | 110 |
| Max. P | 0.959365 |
| Location | 6,734,125 – 6,734,235 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.92 |
| Shannon entropy | 0.25588 |
| G+C content | 0.57462 |
| Mean single sequence MFE | -47.72 |
| Consensus MFE | -37.40 |
| Energy contribution | -39.00 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6734125 110 - 22422827 GGAACUGGCCAGCUGGGCGCAGUGCGAGGAUGGGUCUGGUCUCUGGGUUGG-----GACGUAGAUCUCAGGCCCAGUGGCCACACACUUUGCACGUAAGUUGAGCAACAUAUCUU----- ((......)).(((.(((...((((((((....((.(((((.(((((((((-----((......))))).)))))).))))).)).))))))))....))).)))..........----- ( -45.20, z-score = -1.92, R) >droEre2.scaffold_4690 15661851 115 - 18748788 GGAACUGGCCAGCUGGACGCAGUGCGAGGAUGGGUCAAAUCUCUGGGUUGG-----GACGUAGAUCCCAGGCCCAGUGACCAAACACUUUGCACGUAAGUUGGGCAGCACAUCAGUCACU ....(((.((((((....((.((((((((...(((((.....(((((((((-----((......))))).))))))))))).....)))))))))).)))))).)))............. ( -47.60, z-score = -2.52, R) >droYak2.chrX 2701350 114 - 21770863 GGAACUGGCCAGCUGGACGCAGUGCGAGGAUGGGUCCAUUCUCUGGGUUGG-----GACGGAGAUCCCAGGCCCAGUGACCAAAUACUUUGCACGUAAGUUGGGCCAAAAUAAAGUCAU- .....(((((((((....((.((((((((...((((......(((((((((-----((......))))).)))))).)))).....)))))))))).)))).)))))............- ( -44.20, z-score = -2.06, R) >droSec1.super_4 6117229 115 + 6179234 GGAACUGGCCAGCUGGGCGCAGUGCGAGGAUGGGUCUGGUCUCUGGGCUGGGACGCGACGCAGAUCCCAGGCCCAGUGACCACACACUUUGCACGUAAGUUGGGCAACUUAUCUU----- .....((.((((((....((.((((((((....((.(((((.((((((((((((........).))))).)))))).))))).)).)))))))))).)))))).)).........----- ( -53.00, z-score = -2.73, R) >droSim1.chrX_random 2157822 115 - 5698898 GGAACUGGCCAGCUGGGCGCAGUGCGAGGAUGGGUCUGGUCUCUGGGUUGGGACGCGACGCAGAUCCCAGGCCCAGUGACCACACAAUUUGCACGUAAGUUGGACAACUUAUCUU----- .....(((((.....))).))(((((((..(((((((((..((((.((((.....)))).))))..)))))))))(((....)))..)))))))(((((((....)))))))...----- ( -48.60, z-score = -2.34, R) >consensus GGAACUGGCCAGCUGGGCGCAGUGCGAGGAUGGGUCUGGUCUCUGGGUUGG_____GACGCAGAUCCCAGGCCCAGUGACCACACACUUUGCACGUAAGUUGGGCAACAUAUCUU_____ ((......)).(((.(((...((((((((.(((((((((..((((.(((.......))).))))..)))))))))(((....))).))))))))....))).)))............... (-37.40 = -39.00 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:22:02 2011