| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,707,873 – 6,707,937 |
| Length | 64 |
| Max. P | 0.969775 |
| Location | 6,707,873 – 6,707,937 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 62.38 |
| Shannon entropy | 0.68326 |
| G+C content | 0.29260 |
| Mean single sequence MFE | -9.64 |
| Consensus MFE | -4.56 |
| Energy contribution | -3.52 |
| Covariance contribution | -1.04 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6707873 64 - 22422827 GUUUUAAAGGAUAGUUUUAAGAUUUUAAAUUUAAAGAUAUGAAAACGCAUAUCGCAGAAACACC (((((........(((((...(((((.......)))))...)))))((.....)).)))))... ( -8.30, z-score = -1.58, R) >droSim1.chrX_random 2144001 64 - 5698898 GUUUUAAAGGUUAGUUUUUGGAUUUUAAAUUUAAAGAUAUGAAAACUCAUAUCGCAGAAACACC ........(((..(((((((...((((....))))(((((((....))))))).)))))))))) ( -12.80, z-score = -2.71, R) >droSec1.super_4 6090968 64 + 6179234 GUUUUAAAGGUUAGUUUUAAGAUUUUAAAUUUAAAGAUAUGAAAACUCAUAUCGCAGAAACACC (((((.((((((........)))))).........(((((((....)))))))...)))))... ( -10.20, z-score = -2.12, R) >droYak2.chrX 2675331 60 - 21770863 --GUUUAAGAUUAAUUUUAAGAUUUUGAAUU--AAGAUAUGAAGCCGUAGAUCACAGAAACACU --((((((((((........)))))))))).--....((((....))))............... ( -4.90, z-score = -0.08, R) >dp4.chrXL_group1a 6535456 53 - 9151740 -----------UGGUUCCAAAGCUCGAAAGAUCGAAAGUUACUGAUGGAUUUUCUUGGGGUUUG -----------.((..((((.(.((....)).)(((((((.......)))))))))))..)).. ( -12.00, z-score = -0.80, R) >consensus GUUUUAAAGGUUAGUUUUAAGAUUUUAAAUUUAAAGAUAUGAAAACGCAUAUCGCAGAAACACC .............(((((.....((((....))))((((((......))))))...)))))... ( -4.56 = -3.52 + -1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:57 2011