| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,699,450 – 6,699,565 |
| Length | 115 |
| Max. P | 0.594124 |
| Location | 6,699,450 – 6,699,565 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 78.49 |
| Shannon entropy | 0.41007 |
| G+C content | 0.39576 |
| Mean single sequence MFE | -16.31 |
| Consensus MFE | -10.39 |
| Energy contribution | -10.59 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6699450 115 + 22422827 --GUGGACACCAUUCUUGUCCAGCUUUCUCUUUUCAAUAGACGUAUCGCCGCAAUAGCAAGUGCA-UCUCUCUUUUUUUCCCC---AUCCAUACUUGCUAAAUGUAUUAUUAUUUAUAUUC --.((((((.......))))))((...((((.......))).)....)).....(((((((((..-.................---.....)))))))))((((((........)))))). ( -16.46, z-score = -1.71, R) >droAna3.scaffold_13335 1128046 97 - 3335858 GAUCGGUGACUAUUCUUGACCAGCUUUCUCUUUUCAAA--------CGCCCCAAAAGCCUGUCCAGUCAGCCUGUCCGGGGCCGACUCUCUUAUCAGUUGAAUGU---------------- ....(((.(.......).))).................--------.(((((...((.(((......))).))....)))))(((((........))))).....---------------- ( -19.20, z-score = 0.68, R) >droEre2.scaffold_4690 15627575 111 + 18748788 --GUGGACACCAUUCUUGUCCAGCUUUCUCUUUUCAAUAGUCGUAUCGCCGCAAUAGCAAGUGCA-UCUCUCUUUUUUUUCCCC-------UACUUGCUAAAUGUAUUAUUAUUUAUAUUC --.((((((.......))))))................................(((((((((..-..................-------)))))))))((((((........)))))). ( -16.65, z-score = -2.30, R) >droYak2.chrX 2666873 110 + 21770863 --GGGGACACCAUUCUUGUCCAGCUUUCUCUUUUCAAUAGUCGUAUCGCCGCAACAGCAAGUGCA-UCUCUCUUUUUUUCCCC--------UACUUGCUAAAUGUAUUAUUAUUUAUAUUC --((.((.((.(((.(((...((......))...))).))).)).)).)).....((((((((..-.................--------)))))))).((((((........)))))). ( -15.41, z-score = -0.77, R) >droSec1.super_4 6082636 116 - 6179234 --GUGGACACCAUUCUUGUCCAGCUUUCUCUUUUCAAUAGUCGUAUCGCCGCAAUAGCAAGUGCA-UCUCUCUUUUUUUCCCCC--AUCCAUACUUGCUAAAUGUAUUAUUAUUUAUAUUC --.((((((.......))))))................................(((((((((..-..................--.....)))))))))((((((........)))))). ( -16.31, z-score = -2.21, R) >droSim1.chrX_random 2134692 118 + 5698898 --GUGGACACCAUUCUUGUCCAGCUUUCUCUUUUCAAUAGUCGUAUCGCCGCAAUAGCAAGUGCA-UCUCUCUUUUUUUUUUCCCCAUCCAUACUUGUUAAAUGUAUUAUUAUUUAUAUUC --.((((((.......))))))................................(((((((((..-.........................)))))))))((((((........)))))). ( -13.83, z-score = -1.36, R) >consensus __GUGGACACCAUUCUUGUCCAGCUUUCUCUUUUCAAUAGUCGUAUCGCCGCAAUAGCAAGUGCA_UCUCUCUUUUUUUCCCCC__AUCCAUACUUGCUAAAUGUAUUAUUAUUUAUAUUC ....(((((.......))))).............................(((..((((((((............................))))))))...)))................ (-10.39 = -10.59 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:56 2011