| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,688,570 – 6,688,690 |
| Length | 120 |
| Max. P | 0.829323 |
| Location | 6,688,570 – 6,688,690 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.17 |
| Shannon entropy | 0.15376 |
| G+C content | 0.38231 |
| Mean single sequence MFE | -31.89 |
| Consensus MFE | -26.78 |
| Energy contribution | -27.50 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6688570 120 - 22422827 CGAGAACAUUCAAUUGCUUAUUUUCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGUCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAUGU .....((((......((..................(((((((.(((((.(((((....)))))..))))).))))))).((..(((((((.....)))))))..))))........)))) ( -31.64, z-score = -1.52, R) >droEre2.scaffold_4690 15616366 119 - 18748788 UAAAGACAUUCAAUUGCUAAUUUGCAAAUACAACUGCGGUGUGUCACAAGUGAGAG-CUUUGUGGUGUGAAACACAGACGAUUUGAUCACCAAAAUUGGUCAUUUCGCGACACUGUAUAU .............((((......)))).......((((((((..(((((((....)-).)))))(((.....))).(.(((..((((((.......))))))..)))).))))))))... ( -31.90, z-score = -1.54, R) >droYak2.chrX 2654389 120 - 21770863 UAAAGAUAUUCAAUUGCUCAUUUGCAAAUACAACUGCGGUGUGUCACAAAUGAGUGCCUUUGUGCUGUGAAACACAGCCGAUUUGAUCACCAAAAUUGGUCAUUUCGCUACACUUUAUAU (((((..........(((((((((...(((((.(....))))))..)))))))))((....(.((((((...)))))))((..((((((.......))))))..))))....)))))... ( -31.20, z-score = -2.15, R) >droSec1.super_4 6072382 120 + 6179234 CGAGAACAUUCAAUUGCUAAUUUGUAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAACCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAUAU .................(((..((((...........(((((.(((((.(((((....)))))..))))).)))))..(((..(((((((.....)))))))..))).))))..)))... ( -28.80, z-score = -1.32, R) >droSim1.chrX 5260160 120 - 17042790 CGAGAACAUUCAAUUGCUAAUUUGCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGCCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAUAU .............((((......))))........(((((((.(((((.(((((....)))))..))))).)))))))(((..(((((((.....)))))))..)))............. ( -35.90, z-score = -3.13, R) >consensus CGAGAACAUUCAAUUGCUAAUUUGCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGCCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAUAU .............((((......))))........(((((((.(((((.(((((....)))))..))))).)))))))(((..(((((((.....)))))))..)))............. (-26.78 = -27.50 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:54 2011