| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,444,217 – 10,444,314 |
| Length | 97 |
| Max. P | 0.878147 |
| Location | 10,444,217 – 10,444,314 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.11 |
| Shannon entropy | 0.39367 |
| G+C content | 0.33443 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -13.03 |
| Energy contribution | -13.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10444217 97 - 23011544 --UGAGCACACAACUAUUGCGUAUACUAC-AAAUACGCA---CAAAUAUGUUAUAUAAUUAUAUAUA----AAUCAGUUUGGUUCUCAAGCUGUGACUUAGGAAUUU------------- --(((((((((......(((((((.....-..)))))))---(((((...(((((((....))))))----)....)))))........).)))).)))).......------------- ( -19.50, z-score = -1.78, R) >droAna3.scaffold_12916 14285676 115 - 16180835 ---GUGAACACAAGUAUUGCGUAUACCACAAAAUACGCAUAUAUAAUAUGUUAUGUAAUGAUAUAUACGAGUAUCAGUAUA--UUUCAUGAUCAAGCUUCUGAAUGCUGUACGUAAAUUU ---..........(((((((((((........))))))).))))......(((((((((((.((((((........)))))--).)))).....(((........))).))))))).... ( -24.30, z-score = -0.91, R) >droEre2.scaffold_4929 11653272 97 + 26641161 ---GAGCACACAACUAUUGCGUAUACUAC-GAAUACGCACAUCAGAUAUGUUAUAUAAC--UAUGUA----AAUCAGUUCGGUUCUCAGGCUGGGGCUUUGGAAUUU------------- ---((((..........(((((((.....-..))))))).....(((...((((((...--.)))))----)))).))))((((((.((((....)))).)))))).------------- ( -21.40, z-score = -1.48, R) >droYak2.chr2L 6849293 99 - 22324452 -GAGCACACACAACUAUUGCGUAUACUAC-GAGUACGCACAUCAAAUAUGUUAUAUAAC--UAUGUA----AAUCAGUUCGGUUCUCAAGCUGUGGCUUAGGAAUUU------------- -((((............(((((((.....-..)))))))...........((((((...--.)))))----)....))))(((((..((((....))))..))))).------------- ( -21.60, z-score = -1.34, R) >droSec1.super_3 5872088 99 - 7220098 UAUGAGCACACAACUAUUGCGUAUACAAC-AAAUACGCA---CAAAUAUGUUAUAUAAUUAUAUAUA----AAUCAGUUCGGUUCUCAAGCUGCGACUUGGGAAUUU------------- ...((((..........(((((((.....-..)))))))---........(((((((....))))))----)....))))((((((((((......)))))))))).------------- ( -23.50, z-score = -3.42, R) >droSim1.chr2L 10238319 99 - 22036055 UAUGAGCACACAACUAUUGCGUAUACUAC-AAAUACGCA---CAAAUAUGUUAUAUAAUUAUAUAUA----AAUCAGUUCGCUUCUCAAGCUGCGACUUGGGAAUUU------------- ...((((..........(((((((.....-..)))))))---........(((((((....))))))----)....))))..((((((((......))))))))...------------- ( -21.90, z-score = -2.85, R) >consensus __UGAGCACACAACUAUUGCGUAUACUAC_AAAUACGCA___CAAAUAUGUUAUAUAAUUAUAUAUA____AAUCAGUUCGGUUCUCAAGCUGCGACUUAGGAAUUU_____________ ...((((..........(((((((........)))))))............((((((....)))))).........))))((((((.(((......))).)))))).............. (-13.03 = -13.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:12 2011