| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,669,032 – 6,669,090 |
| Length | 58 |
| Max. P | 0.954288 |
| Location | 6,669,032 – 6,669,090 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 70.69 |
| Shannon entropy | 0.47558 |
| G+C content | 0.54815 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -13.01 |
| Energy contribution | -14.20 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6669032 58 - 22422827 UGGUUGCGAGGUGGGGGUGGUCUGGCCAGGCCAUAAUGCACUCACUGGCAACGUUUAC ..(((((..((((((.(((((((....)))))))......)))))).)))))...... ( -24.00, z-score = -2.43, R) >droSec1.super_4 6053097 58 + 6179234 UGGUUGCGAGGUGGGGGUGGUCUGGCCAGGCCAUAAUGCACUCACUGGCAACGUUUAC ..(((((..((((((.(((((((....)))))))......)))))).)))))...... ( -24.00, z-score = -2.43, R) >droSim1.chrX 5240974 58 - 17042790 UGGUUGCGAGGUGGGGGUGGUCUGGCCAGGCCAUAAUGCACUCACUGGCAACGUUUAC ..(((((..((((((.(((((((....)))))))......)))))).)))))...... ( -24.00, z-score = -2.43, R) >droVir3.scaffold_12928 4028419 53 - 7717345 UAGCUUCAAUUUGAGCUUGGCUUGCCCGGCUGCUUGUCUAUUAAUUGAUGAUC----- .............((((.((....)).))))..(..((........))..)..----- ( -8.70, z-score = 0.54, R) >consensus UGGUUGCGAGGUGGGGGUGGUCUGGCCAGGCCAUAAUGCACUCACUGGCAACGUUUAC ..(((((..((((((.(((((((....)))))))......)))))).)))))...... (-13.01 = -14.20 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:51 2011