| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,643,690 – 6,643,769 |
| Length | 79 |
| Max. P | 0.642474 |
| Location | 6,643,690 – 6,643,769 |
|---|---|
| Length | 79 |
| Sequences | 10 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 69.57 |
| Shannon entropy | 0.59688 |
| G+C content | 0.44001 |
| Mean single sequence MFE | -19.19 |
| Consensus MFE | -6.07 |
| Energy contribution | -5.96 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6643690 79 + 22422827 ------UUUAAUCGCUUUAACCGCUUGAUUUGCAUUUGUCGAACAAG---CGGAGA-CGACGUAAUUA-CCCGUAAUUCGGGUUAUACAG ------.....(((((....(((((((.(((((....).))))))))---))))).-))).(((...(-((((.....)))))..))).. ( -24.30, z-score = -3.50, R) >droPer1.super_25 588148 67 - 1448063 -----UUCGUCUCGUCUGCUCUGCUCAAUUUGCU----------------CAGCGA-CAACGUAAUUA-CCCGUAAUUCGGGUUAUACAG -----........(((.(((..((.......)).----------------.)))))-)...(((...(-((((.....)))))..))).. ( -18.60, z-score = -3.69, R) >dp4.chrXL_group1a 6460149 88 + 9151740 UUCGUCUGGUCUCGUCUGCUCUGCUCAAUUUGCGUUUGUCGAACAAGCGACAGCGA-CGACGUAAUUA-CCCGUAAUUCGGGUUAUACAG ........((((((.(((.((.((.......))(((((.....)))))))))))))-.)))(((...(-((((.....)))))..))).. ( -26.10, z-score = -1.78, R) >droEre2.scaffold_4690 15569630 76 + 18748788 -------UUUAUCG--UCAUCCGCUUGAUUUGCAUUUGUCGAACAAG---CGGAGA-CGACGUAAUUA-CCCGUAAUUCGGGUUAUACGG -------....(((--((.((((((((.(((((....).))))))))---))))))-)))((((...(-((((.....)))))..)))). ( -34.20, z-score = -6.26, R) >droSec1.super_4 6028548 79 - 6179234 ------UUAAAUCGCCUUAACCGCUGGAUUUGCAUUUGUCGAACAAG---CGGAGA-CGACGUAAUUA-CCCGUAAUUCGGGUUAUACAG ------.....(((.((...(((((...(((((....).))))..))---))))).-))).(((...(-((((.....)))))..))).. ( -20.70, z-score = -1.70, R) >droGri2.scaffold_15203 6863978 80 - 11997470 ------UUUUUUUGGGUUGCUUGUUUAAUUUGCAAUCAUUGAAGAUG---CUCAGA-CGUCGUAAUUGGCACGUAAUUCGGGUUAUACAG ------....((((((((((..((((.....(((.((......))))---)..)))-)((((....))))..))))))))))........ ( -13.70, z-score = 0.20, R) >droVir3.scaffold_13042 2894115 63 - 5191987 -----------------------CUUGAUUUGCAUUUGUGGAACAUG---CGCAGA-CGUCGUAAUUGGCCCGUAAUUCGGGUUAUACCG -----------------------........((.((((((.......---))))))-.)).(((..(((((((.....)))))))))).. ( -14.30, z-score = 0.03, R) >droMoj3.scaffold_6328 1268275 63 + 4453435 -----------------------CUUGAUUUGCAUUUGUGGAACAUG---GGCAGA-CGUCGUAAUUGCCCCGUAAUUCGGGUUAUACAG -----------------------(((((.((((...((.....)).(---(((((.-........)))))).)))).)))))........ ( -13.20, z-score = 0.14, R) >droAna3.scaffold_13117 4424429 62 + 5790199 ------------------------CUGAUUUGCAUUUGUCGAACAAA---CCGAGAUCGUCGUAAUUA-CCCGUAAUUCGGGUUAUACAG ------------------------..(((((...((((.....))))---...)))))...(((...(-((((.....)))))..))).. ( -13.50, z-score = -1.16, R) >droYak2.chrX 2606678 61 + 21770863 ------------------------UUAAUUUGCAUUUGUCGAACAAG---CGGAGA-CGACGUAAUUA-CCCGUAAUUCGGGUUAUACAG ------------------------..........((((.....))))---((....-))..(((...(-((((.....)))))..))).. ( -13.30, z-score = -1.31, R) >consensus ___________UCG__U___C_GCUUGAUUUGCAUUUGUCGAACAAG___CGGAGA_CGACGUAAUUA_CCCGUAAUUCGGGUUAUACAG .............................................................(((..((.((((.....)))).))))).. ( -6.07 = -5.96 + -0.11)
| Location | 6,643,690 – 6,643,769 |
|---|---|
| Length | 79 |
| Sequences | 10 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 69.57 |
| Shannon entropy | 0.59688 |
| G+C content | 0.44001 |
| Mean single sequence MFE | -17.91 |
| Consensus MFE | -5.78 |
| Energy contribution | -5.88 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6643690 79 - 22422827 CUGUAUAACCCGAAUUACGGG-UAAUUACGUCG-UCUCCG---CUUGUUCGACAAAUGCAAAUCAAGCGGUUAAAGCGAUUAAA------ ..(((..(((((.....))))-)...)))((((-(..(((---((((................))))))).....)))))....------ ( -22.49, z-score = -2.83, R) >droPer1.super_25 588148 67 + 1448063 CUGUAUAACCCGAAUUACGGG-UAAUUACGUUG-UCGCUG----------------AGCAAAUUGAGCAGAGCAGACGAGACGAA----- ..(((..(((((.....))))-)...))).(((-(((((.----------------.((.......))..))).)))))......----- ( -18.40, z-score = -2.42, R) >dp4.chrXL_group1a 6460149 88 - 9151740 CUGUAUAACCCGAAUUACGGG-UAAUUACGUCG-UCGCUGUCGCUUGUUCGACAAACGCAAAUUGAGCAGAGCAGACGAGACCAGACGAA ..(((..(((((.....))))-)...))).(((-((.(((((((((((((((..........))))))).))).))).))....))))). ( -27.80, z-score = -2.41, R) >droEre2.scaffold_4690 15569630 76 - 18748788 CCGUAUAACCCGAAUUACGGG-UAAUUACGUCG-UCUCCG---CUUGUUCGACAAAUGCAAAUCAAGCGGAUGA--CGAUAAA------- ..(((..(((((.....))))-)...)))((((-((((((---((((................)))))))).))--))))...------- ( -29.89, z-score = -5.19, R) >droSec1.super_4 6028548 79 + 6179234 CUGUAUAACCCGAAUUACGGG-UAAUUACGUCG-UCUCCG---CUUGUUCGACAAAUGCAAAUCCAGCGGUUAAGGCGAUUUAA------ ..(((..(((((.....))))-)...)))((((-((((((---(((((.........))).....)))))...)))))))....------ ( -22.60, z-score = -2.18, R) >droGri2.scaffold_15203 6863978 80 + 11997470 CUGUAUAACCCGAAUUACGUGCCAAUUACGACG-UCUGAG---CAUCUUCAAUGAUUGCAAAUUAAACAAGCAACCCAAAAAAA------ .(((.(((.........((((.....))))...-.....(---((((......)).)))...))).)))...............------ ( -6.40, z-score = 0.67, R) >droVir3.scaffold_13042 2894115 63 + 5191987 CGGUAUAACCCGAAUUACGGGCCAAUUACGACG-UCUGCG---CAUGUUCCACAAAUGCAAAUCAAG----------------------- ..(((...((((.....)))).....)))....-.....(---(((.........))))........----------------------- ( -10.00, z-score = 0.44, R) >droMoj3.scaffold_6328 1268275 63 - 4453435 CUGUAUAACCCGAAUUACGGGGCAAUUACGACG-UCUGCC---CAUGUUCCACAAAUGCAAAUCAAG----------------------- .(((((.....((((....(((((.........-..))))---)..)))).....))))).......----------------------- ( -12.70, z-score = -1.11, R) >droAna3.scaffold_13117 4424429 62 - 5790199 CUGUAUAACCCGAAUUACGGG-UAAUUACGACGAUCUCGG---UUUGUUCGACAAAUGCAAAUCAG------------------------ .((((..(((((.....))))-)...))))........((---(((((.........)))))))..------------------------ ( -14.70, z-score = -1.68, R) >droYak2.chrX 2606678 61 - 21770863 CUGUAUAACCCGAAUUACGGG-UAAUUACGUCG-UCUCCG---CUUGUUCGACAAAUGCAAAUUAA------------------------ .(((((.(((((.....))))-)......((((-.(....---...)..))))..)))))......------------------------ ( -14.10, z-score = -2.00, R) >consensus CUGUAUAACCCGAAUUACGGG_UAAUUACGUCG_UCUCCG___CUUGUUCGACAAAUGCAAAUCAAGC_G___A__CGA___________ ..(((...((((.....)))).....)))............................................................. ( -5.78 = -5.88 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:49 2011