| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,642,307 – 6,642,399 |
| Length | 92 |
| Max. P | 0.772950 |
| Location | 6,642,307 – 6,642,399 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.19 |
| Shannon entropy | 0.32683 |
| G+C content | 0.38037 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -14.51 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6642307 92 - 22422827 -------UUUGCUU---UUUGCACAUAUUUGGCAGAUCAU-CCAUCACAUCAU---CAAUGCAAUCCCAAUCGAAGUGGUAGUUUUUAUUGCCAGCGAUCUUUAAU -------.((((..---..(((.((....)))))(((...-..))).......---....)))).....((((...(((((((....))))))).))))....... ( -15.90, z-score = -0.42, R) >droSec1.super_4 6027218 92 + 6179234 UUUGACUUUUGCAUAUAUGCACACAUAUCUGGCAGAUCAUCCCAUCGCAUCAU--------------CCAUCGCAGUGGUAGUUUUUACUGCCAGCGAUCUUUAAU ..(((..(((((..(((((....)))))...))))))))..............--------------..(((((..(((((((....))))))))))))....... ( -21.90, z-score = -2.13, R) >droSim1.chrX_random 2113600 106 - 5698898 UUUGAUUUUUGCAUAUAUGCACACAUAUUUGGCAGAUCAUCCCAUUACAUCAUCAUCAAUGCAAUCCCAAUCGAAGUGGUAGUUUUUACUACCAGCGAUCUUUAAC ..(((((..(((..(((((....)))))...))))))))..............................((((...(((((((....))))))).))))....... ( -20.70, z-score = -2.13, R) >consensus UUUGA_UUUUGCAUAUAUGCACACAUAUUUGGCAGAUCAUCCCAUCACAUCAU___CAAUGCAAUCCCAAUCGAAGUGGUAGUUUUUACUGCCAGCGAUCUUUAAU .......(((((..(((((....)))))...))))).................................((((...(((((((....))))))).))))....... (-14.51 = -15.40 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:47 2011