| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,630,215 – 6,630,324 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 6,630,215 – 6,630,324 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Shannon entropy | 0.33032 |
| G+C content | 0.42443 |
| Mean single sequence MFE | -31.24 |
| Consensus MFE | -17.96 |
| Energy contribution | -17.52 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 6630215 109 - 22422827 GGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU----AUAUGUGCAAGUGUACAU-UCCACUCUAUGUGUUUUUGCGCCGAAAGUCGCCCAGUCGCCCA ((((.((..((..(((((.(((.(((((.(((.((((((((.((((..----.....)))).)))))).)-).))))))).).))))))))(.(....).)))...)).)))). ( -34.80, z-score = -2.24, R) >droEre2.scaffold_4690 15556083 103 - 18748788 GGGUUACAAGCAUGCAAAUAAC--UAGAUGUGCAUGUGCA--AUAAAUGUGUAUAUAUGUACAUACAUAUAUCCGCUAUAUAUG-UUUUGCGCCGAAAGUCACCCAGU------ ((((.((..(((((((.((...--...)).)))))))(((--(...((((((((((((((....))))))).....))))))).-..)))).......)).))))...------ ( -29.40, z-score = -1.87, R) >droYak2.chrX 2592882 107 - 21770863 GGGUUACCAGAAUGCAAAUAACUCUAGAUGUGCAUGUGCACUAUACAUAUGUACGUACAUAUGUGUAUAUAUCCACUCUAUAUG-UUUUGCGCCGAAAGUCAGCCAGU------ .((((........(((((......((((.(((.(((((...(((((((((((....)))))))))))))))).)))))))....-.)))))(.(....).)))))...------ ( -28.70, z-score = -1.31, R) >droSec1.super_4 6015156 101 + 6179234 GGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU----AUAUGUGCAUGUGUAU-U-UCCAGUCUAUAUG-UUUUGCGCCGAAAGUCGCCCAGU------ ((((.((...(.((((((......(((((.((.(((((((((((((..----.....)))))))))))-)-).)))))))....-.))))))..)...)).))))...------ ( -30.80, z-score = -1.82, R) >droSim1.chrX 5222034 105 - 17042790 GGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAUAUACAUAUGUGCAUGUGUAU-U-UCCAGUCUAUAUG-UUUUGCGCCGAAAGUCGCCCAGU------ ((((.....(((.(((.((((((..(((((..((.(..((((((.......))))))..).))..)))-)-)..))).))).))-)..)))(.(....).)))))...------ ( -32.50, z-score = -1.96, R) >consensus GGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU_U__AUAUGUGCAUGUGUAUAU_UCCACUCUAUAUG_UUUUGCGCCGAAAGUCGCCCAGU______ ((((.........(((((......((((.((((....)))).............((((((....))))))......))))......)))))(.(....).)))))......... (-17.96 = -17.52 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:39 2011