| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,629,827 – 6,629,935 |
| Length | 108 |
| Max. P | 0.772651 |
| Location | 6,629,827 – 6,629,935 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.37 |
| Shannon entropy | 0.45291 |
| G+C content | 0.46189 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -20.33 |
| Energy contribution | -21.52 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6629827 108 - 22422827 AUAUAUUUUGCAAAAA--------GGCGGCGAACAAAGAGCCAGGCGACAUGUGGCAUCAACUAAUUGUUGUCAUAUCCAUUGUUGUACCUGCUCGGGCGCCACAAACCAGUUUGC .........(((((..--------((.((((..(...((((.(((((((((((((((.(((....))).))))))).....)))))..))))))))..)))).....))..))))) ( -31.50, z-score = -1.15, R) >droEre2.scaffold_4690 15555707 103 - 18748788 ----AUUUUGC-ACAA--------GGCAGCGAACAAAGAGCGAGGCGACAUGUGGCAUCAACUAAUUGUUGUCAUAUCCAUUGUUGUACCUGCUCGGGCGCCACAAACCAGUUCGC ----....(((-....--------.)))((((((...(((((..(((((((((((((.(((....))).))))))).....))))))...)))))((..........)).)))))) ( -32.00, z-score = -1.39, R) >droYak2.chrX 2592468 112 - 21770863 ----AUUUUGCAAAUAACGACAGCGACAACGAACAAAGAGCCAGGCGACAUGUGGCAUCAACUAAUUGUUGUCAUAUCCAUUGUUGUAACUGCUCGGGCGCCACAAACCAGUUCGC ----...((((...........))))...(((((...((((...(((((((((((((.(((....))).))))))).....))))))....))))((..........)).))))). ( -27.60, z-score = -0.40, R) >droSec1.super_4 6014776 104 + 6179234 ----AUUUUGCAAAAA--------GACGGCGAACAAAGAGCCAGGCGACAUGUGGCAUCAACUAAUUGUUGUCAUAUCCAUUGUUGUACCUGCUCGGGCGCCACAAACCAGUUCGC ----............--------....((((((...((((.(((((((((((((((.(((....))).))))))).....)))))..)))))))((..........)).)))))) ( -29.60, z-score = -1.08, R) >droSim1.chrX 5221656 104 - 17042790 ----AUUUUGCAAAAA--------GGCGGCGAACAAAGAGCCAGGCGACAUGUGGCAUCAACUAAUUGUUGUCAUAUCCAUUGUUGUACCUGCUCGGGCGCCACAAACCAGUUCGC ----....(((.....--------.)))((((((...((((.(((((((((((((((.(((....))).))))))).....)))))..)))))))((..........)).)))))) ( -30.90, z-score = -0.99, R) >droWil1.scaffold_181089 12016289 90 - 12369635 -AUAUUUCCGUAAAAAA-------AAUUGCAAA-AGAAAACAUCGCAGCAUGCGUAACUAGGAAACUAAGGUC--------UCUCGUACCUGUUUGGGUA-CAUUUCC-------- -...(((((((((....-------..))))...-.........(((.....)))......)))))........--------....((((((....)))))-)......-------- ( -17.30, z-score = -1.21, R) >consensus ____AUUUUGCAAAAA________GACGGCGAACAAAGAGCCAGGCGACAUGUGGCAUCAACUAAUUGUUGUCAUAUCCAUUGUUGUACCUGCUCGGGCGCCACAAACCAGUUCGC ............................((((((...((((...(((((((((((((.(((....))).))))))).....))))))....))))((..........)).)))))) (-20.33 = -21.52 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:38 2011