Locus 13449

Sequence ID dm3.chrX
Location 6,619,813 – 6,619,896
Length 83
Max. P 0.595757
window18521

overview

Window 1

Location 6,619,813 – 6,619,896
Length 83
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 59.60
Shannon entropy 0.62304
G+C content 0.37082
Mean single sequence MFE -15.92
Consensus MFE -6.59
Energy contribution -8.15
Covariance contribution 1.56
Combinations/Pair 1.35
Mean z-score -1.22
Structure conservation index 0.41
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.595757
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6619813 83 + 22422827
------ACAGGUGUAAU-AACUCUGAUAUGCUAUGCACAUAUAAUAUGUACAUAUAAUAUGUAUAUACGUAGCGCCAUAAAAACGCACUC
------.(((((.....-.)).)))....((((((.........((((((((((...))))))))))))))))................. ( -16.10, z-score =  -0.40, R)
>droPer1.super_25 562983 90 - 1448063
AGAGAUCCAAAGAUGAUGAAAUCCAAUCCCAAGUGGAUAUCUACGAGGCACUCGCAUAUACUACGUACACCACGGACAAGAAUCGUAUUC
.((.(((((.....(((........))).....))))).))(((((.((....))........(((.....)))........)))))... ( -14.80, z-score =   0.19, R)
>droSec1.super_4 6005308 69 - 6179234
------ACGGGUAUAAU-AACUCUGAUAUGCUACGUA-----AAUAUGUACAUAUA---------UACGUAGCGCCAUAAAAACGCACUC
------..((((.....-.))))......((((((((-----.((((....)))).---------))))))))................. ( -16.40, z-score =  -2.34, R)
>droSim1.chrX 5210688 69 + 17042790
------ACGGGUAUAAU-AACUCUGAUAUGCUACGUA-----AAUAUGUACAUAUA---------UACGUAGCGCCAUAAAAACGCACUC
------..((((.....-.))))......((((((((-----.((((....)))).---------))))))))................. ( -16.40, z-score =  -2.34, R)
>consensus
______ACAGGUAUAAU_AACUCUGAUAUGCUACGUA_____AAUAUGUACAUAUA_________UACGUAGCGCCAUAAAAACGCACUC
............................((((((((((((((....(((....)))....))))))))))))))................ ( -6.59 =  -8.15 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:38 2011