Locus 13448

Sequence ID dm3.chrX
Location 6,618,445 – 6,618,513
Length 68
Max. P 0.898312
window18520

overview

Window 0

Location 6,618,445 – 6,618,513
Length 68
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 88.77
Shannon entropy 0.18906
G+C content 0.41311
Mean single sequence MFE -16.30
Consensus MFE -12.78
Energy contribution -13.22
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -2.26
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.14
SVM RNA-class probability 0.898312
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6618445 68 - 22422827
CUUUUCUCCCCCAUGUCGAAACAAUCGAUCGAUAGAACGAUCGAUCUGUGGUUAGCAA-AUCGAUAACA
.............((((((.(((((((((((......)))))))).))).(....)..-.))))))... ( -16.30, z-score =  -1.83, R)
>droSim1.chrX 5209330 67 - 17042790
CUUUUCU-CUCCAUGUCAAAACAAUCGAUCGAUAGAACGAUCGAUCUGUGGUUAGCCA-AUCGAUAACA
.......-.....((((...(((((((((((......)))))))).)))((....)).-...))))... ( -16.20, z-score =  -2.17, R)
>droSec1.super_4 6003940 67 + 6179234
CUUUUCU-CUCCAUGUCGAAACAAUCGAUCGAUAGAACGAUCGAUCUGUGGUUAGCCA-AUCGAUAACA
.......-.....((((((.(((((((((((......)))))))).)))((....)).-.))))))... ( -19.60, z-score =  -2.82, R)
>droYak2.chrX 2580591 66 - 21770863
CUUUCC--UCCCAUGUCGAAA-AAUCGAUCGAUACAACGAUCGAUCUCUGAUUAAACACAACGAUAACA
......--.....(((((...-.((((((((......))))))))...((........)).)))))... ( -12.60, z-score =  -2.46, R)
>droEre2.scaffold_4690 15545238 66 - 18748788
CUUUCC--UCCCAUGUCGAAGCAAUCGAUCGAUAGAACGAUCGAUCUGUGGUUAACAA-AUCGAUAACA
......--.....((((((.(((((((((((......)))))))).)))(.....)..-.))))))... ( -16.80, z-score =  -2.03, R)
>consensus
CUUUUCU_CCCCAUGUCGAAACAAUCGAUCGAUAGAACGAUCGAUCUGUGGUUAGCCA_AUCGAUAACA
.............((((((.(((((((((((......)))))))).)))...........))))))... (-12.78 = -13.22 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:37 2011