| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,615,677 – 6,615,767 |
| Length | 90 |
| Max. P | 0.787424 |
| Location | 6,615,677 – 6,615,767 |
|---|---|
| Length | 90 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.13 |
| Shannon entropy | 0.49573 |
| G+C content | 0.56886 |
| Mean single sequence MFE | -36.07 |
| Consensus MFE | -19.30 |
| Energy contribution | -18.85 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6615677 90 - 22422827 --------------------------GCCACCGGCGUGGCCAUUUCAAUGGUGGCCGCUCGCUUGGGCGGCAUCAUUGGCAACAUCGUGAUUGCCCAGCUGCUGGACAACUACUGU---- --------------------------....((((((((((((((.....)))))))))..(((.(((((((((...((....))..))).))))))))).)))))...........---- ( -41.30, z-score = -2.65, R) >droSim1.chrX 5206570 90 - 17042790 --------------------------GCCACCGGCGUGGCCAUUUCGAUGGUGGCCGCUCGCUUGGGCGGCAUCAUUGGCAACAUCGUGAUUGCCCAGCUGCUGGACAACUACUGC---- --------------------------....((((((((((((((.....)))))))))..(((.(((((((((...((....))..))).))))))))).)))))...........---- ( -41.30, z-score = -2.45, R) >droSec1.super_4 6001209 90 + 6179234 --------------------------GCCACCGGCGUGGCCAUUUCAAUGGUGGCCGCUCGCUUGGGCGGCAUCAUUGGCAACAUCGUGAUUGCCCAGCUGCUGGACAACUACUGC---- --------------------------....((((((((((((((.....)))))))))..(((.(((((((((...((....))..))).))))))))).)))))...........---- ( -41.30, z-score = -2.66, R) >droYak2.chrX 2577713 90 - 21770863 --------------------------GCCACCGGUGUGGCCAUUUCGAUGGUCGCCGCUCGAUUGGGCGGCAUCAUUGGCAACAUCGUAAUUGCCCAGCUGCUGGACAACUACUGU---- --------------------------((((..(((..((((((....))))))(((((((....))))))))))..))))......(((.(((.((((...)))).))).)))...---- ( -35.60, z-score = -1.67, R) >droEre2.scaffold_4690 3557029 94 - 18748788 --------------------------GCCAUGGGCAUGUGCUUCAUCAUGAUGGUGGGUCGCUUGGGCGCCGUGGCGGGCAGCAAUAUCCUUGGACGCAUGCUCUUCGCCAGCUGUGACC --------------------------(((((((((..(((.((((((.....)))))).)))....)).)))))))(((((((....((....)).)).))))).((((.....)))).. ( -34.00, z-score = 0.93, R) >droAna3.scaffold_13117 4384622 90 - 5790199 --------------------------GCCACCGGUGUGGCCAUAUCGAUGGUGGCGGCCCGUUUGGGCGGCAUCAUCGGCAACAUCGUUAUCGCCCAGCUGCUGGACAACUAUUGU---- --------------------------.(((.((((..(((.(((.((((((((.(.((((....)))).))))))))(....)...).))).)))..)))).)))...........---- ( -34.40, z-score = -0.32, R) >dp4.chrXL_group1a 6431503 90 - 9151740 --------------------------GCCACCGGCGUGGCCAUCUCCAUGGUGGCGGCCCGUCUCGGCGGCAUCAUUGGCAACAUUGUCAUUGCCCAGCUGCUGGACAACUACUGU---- --------------------------(((.(((.(((((......))))).))).)))..(((.(((((((..((.(((((....))))).))....)))))))))).........---- ( -37.60, z-score = -1.33, R) >droPer1.super_25 558814 90 + 1448063 --------------------------GCCACCGGCGUGGCCAUCUCCAUGGUGGCGGCCCGUCUCGGCGGCAUCAUUGGCAACAUUGUCAUUGCCCAGCUGCUGGACAACUACUGU---- --------------------------(((.(((.(((((......))))).))).)))..(((.(((((((..((.(((((....))))).))....)))))))))).........---- ( -37.60, z-score = -1.33, R) >droWil1.scaffold_180777 4716719 90 + 4753960 --------------------------GCCACUGGUGUGGCCAUCUCCAUGGUGGCAGCUCGUUUGGGUGGCAUCAUUGGUAACAUUGUGAUUGCCCAGCUGUUGGAUAACUAUUGC---- --------------------------(((((....)))))((((.....))))((((((.....(((..(((.((.((....)).)))).)..)))))))))..............---- ( -28.40, z-score = 0.37, R) >droVir3.scaffold_12928 5557118 90 + 7717345 --------------------------GCGACCGGCGUUGCCAUAUCGAUGGUAGCGGCGCGUCUUGGUGGCAUCAUUGGCAACAUUGUGAUUGCCCAGCUGCUCGAUCAUUUCUGC---- --------------------------(((((((.(((((((((....))))))))).)).)))..(((((((((((((....))..)))).))))..)))))..............---- ( -33.60, z-score = -0.84, R) >droMoj3.scaffold_6473 14900579 90 + 16943266 --------------------------GCGACGGGCGUGGCCAUAUCCAUGGUGGCCGCUCGACUGGGCGGCAUCAUUGGCAACAUUGUGAUCGCCCAGCUGCUCGACAACUUCUGC---- --------------------------....(((((((((((((.......))))))))..(.((((((((((.((.((....)).)))).))))))))).)))))...........---- ( -42.40, z-score = -3.05, R) >droGri2.scaffold_15203 8503359 90 - 11997470 --------------------------GCCACUGGCGUUGCCAUUUCGAUGGUGGCGGCACGACUUGGCGGCAUCAUUGGCAACAUUGUGAUCGCCCAGCUGCUGGAUCAUUUCUGU---- --------------------------....(..(((((((((((.....)))))))))..(.((.(((((((.((.((....)).)))).))))).))).))..)...........---- ( -32.80, z-score = -0.62, R) >anoGam1.chr3L 29668092 116 + 41284009 UGCUUCUAUUUUGCUUGUUUUGCAGUGCAACCGGUGUGGCGAUCUCGAUGGUGGCCGCACGGUUGGGCGGUAUCAUCGGCAACGUGGUGAUUGCCACGCUGCUCGACCUGUACUGU---- .((.........)).......((((((((....(((((((.(((.....))).)))))))(((((((((((......(....)(((((....))))))))))))))))))))))))---- ( -54.20, z-score = -4.00, R) >apiMel3.Group1 8930576 90 - 25854376 --------------------------GCAACAGGAAUUGCCAUUUCUAUGGUUGCAGCGCGCCUCGGUGGAAUUAUUGGUAACAUCGUAAUAUCUCAACUCUUGGAUAUGUAUUGU---- --------------------------((((..((..((((((.((((((.(..((.....))..).))))))....))))))..))...((((((........))))))...))))---- ( -18.90, z-score = 0.38, R) >triCas2.ChLG1X 2848366 90 - 8109244 --------------------------GCUACCGGUGUGGCUGUUUCAAUGGUGGCAGCUCGACUUGGUGGUAUAAUUGGUAAUUUAGUUAUUGCUAACUUACUAGAUAAGUAUUGU---- --------------------------(((((((((..(((((((........)))))))..)).)))))))....(((((((.(((((....))))).)))))))...........---- ( -27.70, z-score = -2.58, R) >consensus __________________________GCCACCGGCGUGGCCAUUUCGAUGGUGGCCGCUCGCUUGGGCGGCAUCAUUGGCAACAUUGUGAUUGCCCAGCUGCUGGACAACUACUGU____ ..............................(((((((.(((((....))))).))..........(((((((((((((....))..))))).)))..))))))))............... (-19.30 = -18.85 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:36 2011