| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,602,843 – 6,602,947 |
| Length | 104 |
| Max. P | 0.914441 |
| Location | 6,602,843 – 6,602,947 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.06 |
| Shannon entropy | 0.53941 |
| G+C content | 0.40444 |
| Mean single sequence MFE | -15.14 |
| Consensus MFE | -6.24 |
| Energy contribution | -6.13 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6602843 104 - 22422827 UCAUGCACACACACACACACGACCUCA-CACGCACACUUUUACAACGGGGGUAUCUCACAGAUACAGCGACAGUGAGACACGAACAAAUAAUAAUAGCAAAAAUC ...(((.......(......)..((((-(.(((...((((......))))(((((.....))))).)))...)))))...................)))...... ( -16.10, z-score = -2.39, R) >droEre2.scaffold_4690 15530059 93 - 18748788 ----------UCAUACACACACUCUCA-CACGCACACUAUUACAACGGGGGUAUCUCACAGAUACAGCGACAGUGAGACACGAACAAAUAAUAAUAGCAAAAUC- ----------............(((((-(.(((...((........))..(((((.....))))).)))...))))))..........................- ( -15.10, z-score = -3.05, R) >droYak2.chrX 2565616 98 - 21770863 ----UCAUGCACACACUCUCA--CACA-CACACACACUGUUACAACAGGGGUAUCUCACAGAUACAGUGACAGUGAGACACGAACAAAUAAUAAUAGCAAAAAUC ----............(((((--(...-(((.....((((....))))..(((((.....))))).)))...))))))........................... ( -18.60, z-score = -2.47, R) >droSec1.super_4 5988467 100 + 6179234 ----UCAUGCACACACACACAACCUCA-CACGCACACUAUUACAACGGGGGUAUCUCACAGAUACAGCGACAGUGAGACACGAACAAAUAAUAAUAGCAAAAAUC ----...(((............((((.-..................))))((.((((((.............)))))).))...............)))...... ( -14.53, z-score = -2.12, R) >droSim1.chrX 5192948 102 - 17042790 --UCAUGCACACACACACACAACCUCA-CACGCACACUAUUACAACGGGGGUAUCUCACAGAUACAGCGACAGUGAGACACGAACAAAUAAUAAUAGCAAAAAUU --...(((..............((((.-..................))))((.((((((.............)))))).))...............)))...... ( -14.53, z-score = -2.22, R) >anoGam1.chrU 35894127 95 + 59568033 UAUUACACAAUAAGAAAUGUGUCCUAACCACAUAAAUCGAUUAAAGAGCCCUAUUGCUACAAUCUAGCGUUGGUGG---------AAAUAAUAAAAAAAAAGUU- (((((...........(((((.......)))))...............(((((.(((((.....))))).))).))---------...)))))...........- ( -12.00, z-score = -0.39, R) >consensus ____ACACACACACACACACAACCUCA_CACGCACACUAUUACAACGGGGGUAUCUCACAGAUACAGCGACAGUGAGACACGAACAAAUAAUAAUAGCAAAAAUC .......................((((...(((...((........))..((((((...)))))).)))....))))............................ ( -6.24 = -6.13 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:33 2011