| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,599,440 – 6,599,557 |
| Length | 117 |
| Max. P | 0.668414 |
| Location | 6,599,440 – 6,599,557 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.68 |
| Shannon entropy | 0.10937 |
| G+C content | 0.45812 |
| Mean single sequence MFE | -35.04 |
| Consensus MFE | -29.56 |
| Energy contribution | -30.08 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6599440 117 - 22422827 UUUUGAAACAUUUCUUAUCAACAGGUCAGCGAAACAGGUUGUCUCACUUAGCCAGCGACCACUGUGCUGCACAUUGAGACCGCAUAUGAACGGUCGGUGGUAAAGAGAUGGCAAAUC .((((...((((((((((((.((((((((((.....((((((............))))))....))))).)).))).(((((........)))))..)))).)))))))).)))).. ( -34.40, z-score = -1.73, R) >droEre2.scaffold_4690 15526278 117 - 18748788 UUUUGAAACUUUUCUUAUCUACACGUCAGCGAAACAGGUGGUUUCACUUAGCCAGCGACCACUGUGCUGCACAUUGAGACCGCUUAUGAACGGUCGGCGGUAAAGAGAUGGGAAAUC ..........((((((((((...((((.(((..((((.(((((.(.........).)))))))))..))).......(((((........)))))))))......)))))))))).. ( -35.60, z-score = -2.04, R) >droYak2.chrX 2562152 117 - 21770863 UUUUGAAACUUUUCUUAGUUACAGGUCAGUGAAGCAGGUUGUUUCACUUAGCAAGCGACCACUGUGCUGCACAUUGAGACCGCAUAUGAACGGUCGGUGGUAAAGAGAUGGGAUAUU ........(.((((((..((((...((((((.((((((((((((........))))))))....))))...))))))(((((........))))).))))..)))))).)....... ( -32.20, z-score = -1.03, R) >droSec1.super_4 5985083 117 + 6179234 UUUUGAAACAUUUCUUAUCUACAGGUCAGCGAAGCAGGUUGUCUCACUUAGCCAGCAACCACUGUGCUGCACAUUGAGACCGCAUAUGAACGGUCGGUGGUAAAGAGAUGGCAAAUC .((((...((((((((..((((..(((((((.((..((((((............)))))).)).))))).)).....(((((........))))).))))..)))))))).)))).. ( -36.50, z-score = -2.19, R) >droSim1.chrX 5189861 117 - 17042790 UUUUGAAACAUUUCUUAUCUACAGGUCAGCGAAGCAGGUUGUCUCACUUAGCCAGCAACCACUGUGCUGCACAUUGAGACCGCAUAUGAACGGUCGGUGGUAAAGAGAUGGCAAAUC .((((...((((((((..((((..(((((((.((..((((((............)))))).)).))))).)).....(((((........))))).))))..)))))))).)))).. ( -36.50, z-score = -2.19, R) >consensus UUUUGAAACAUUUCUUAUCUACAGGUCAGCGAAGCAGGUUGUCUCACUUAGCCAGCGACCACUGUGCUGCACAUUGAGACCGCAUAUGAACGGUCGGUGGUAAAGAGAUGGCAAAUC ........((((((((..((((..(((((((.....((((((............))))))....))))).)).....(((((........))))).))))..))))))))....... (-29.56 = -30.08 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:32 2011