| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,598,383 – 6,598,488 |
| Length | 105 |
| Max. P | 0.625266 |
| Location | 6,598,383 – 6,598,488 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 89.28 |
| Shannon entropy | 0.19192 |
| G+C content | 0.40886 |
| Mean single sequence MFE | -13.51 |
| Consensus MFE | -13.28 |
| Energy contribution | -12.96 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6598383 105 - 22422827 CAUAUGCAGCAAACUUGCCCAUAAAAGCAUCAAAGAUGCAGCGCCCUCUCUUCACAUCUUACCAACAGCGUUGUAAAAAGGAA---AAAAAAAACACACACACACAGA ..((((..(((....))).))))......((.....((((((((.......................)))))))).....)).---...................... ( -12.10, z-score = 0.48, R) >droEre2.scaffold_4690 15525177 105 - 18748788 CAUAUGCAGCAAACUUGCCCAUAAAAGCAUCAAAGAUGUAGCGCCCUCUCUUCACAUCUU-CCAACAGCGUUGCAAAAAAAAAUAUAUAUACAACACACAAACAGA-- ....((((((.....(((........)))...(((((((..............)))))))-........))))))...............................-- ( -14.04, z-score = -1.25, R) >droYak2.chrX 2561038 103 - 21770863 CAUAUGCAGCAAACUUGCCCAUAAAAGCAUCAAAGAUGCAGCGCCCUCUUUUCACAUCUUCCCAACUGCGUUGCAAAAACCAA---AAAAAAAAAACACAAACAGA-- ..((((..(((....))).)))).............((((((((.......................))))))))........---....................-- ( -13.60, z-score = -0.74, R) >droSec1.super_4 5984013 98 + 6179234 CAUAUGCAGCAAACUUGCCCAUAAAAGCAUCAAAGAUGCAGCGCCCUCUCUUCACAUCUUCCCAACAGCGUUGCAAAA---AA---AAAAAACACACACACAGA---- ....((((((................(((((...))))).((.........................))))))))...---..---..................---- ( -13.91, z-score = -1.03, R) >droSim1.chrX 5188792 103 - 17042790 CAUAUGCAGCAAACUUGCCCAUAAAAGCAUCAAAGAUGCAGCGCCCUCUCUUCACAUCUUCCCAACAGCGUUGCAAAAA--AA---AAAAAACACACACACACACAGA ....((((((................(((((...))))).((.........................))))))))....--..---...................... ( -13.91, z-score = -1.10, R) >consensus CAUAUGCAGCAAACUUGCCCAUAAAAGCAUCAAAGAUGCAGCGCCCUCUCUUCACAUCUUCCCAACAGCGUUGCAAAAA__AA___AAAAAAAACACACACACACA__ ..((((..(((....))).)))).............((((((((.......................))))))))................................. (-13.28 = -12.96 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:32 2011