| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,443,711 – 10,443,823 |
| Length | 112 |
| Max. P | 0.599946 |
| Location | 10,443,711 – 10,443,823 |
|---|---|
| Length | 112 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Shannon entropy | 0.37680 |
| G+C content | 0.38661 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.03 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10443711 112 + 23011544 GAACAUUUUUCCAAACACUUCAGUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU-C-GAAUUGAGUGUUUUCGAGUUCA-GUGGCAU-GCUGAAGUGCUAAUGCCAUUGCAAC ((((........((((......)))).......))))............((((((..-.-.....))))))......(((((-(((((((-((......))..))))))))).))) ( -24.96, z-score = -1.05, R) >droAna3.scaffold_12916 14285166 113 + 16180835 GAGGAUUUU-CUAAACACUUCACUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU-UCGAAUUGAGUGAUUCCGAGUUCA-GUGGCAUUGGUGAAGUGCUAUGGCCAUUGCAAC ..((((...-......((((((......)).))))..........)))).(((((..-.......))))).......(((((-(((((..((((.....))))..))))))).))) ( -24.31, z-score = -0.03, R) >droEre2.scaffold_4929 11652773 111 - 26641161 GAACAUUUU-CCAAACACUUCAGUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU-U-GAAUUGAGUGUUUCUGAGUUCA-GUGGCAU-GCUGAAGUGCUAAUGCCAUUGCAAC .........-.....(((((((((...((((..................((((((..-.-.....))))))..(((....))-)..))))-)))))))))....(((....))).. ( -27.10, z-score = -1.42, R) >droYak2.chr2L 6848819 111 + 22324452 GAACAUUUU-CCAAACACUUCAGUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU-U-GAAUUGAGUGCCUCCGAGUUCA-GUGGCAU-GCUGAAGUGCUAAUGCCAUUGCAAC ((((.....-..((((......)))).......))))............((((((..-.-.....))))))......(((((-(((((((-((......))..))))))))).))) ( -27.64, z-score = -1.84, R) >droSec1.super_3 5871614 111 + 7220098 GAACAUUUU-CCAAACACUUCAGUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU-C-GAAUUGAGUGUUUUCGAGCUCA-GUGGCAU-GCUGAAGUGCUAAUGCCAUUGCAAC .........-.....(((((((((...((((.(((((............((((((..-.-.....))))))....)))))..-...))))-)))))))))....(((....))).. ( -25.99, z-score = -1.23, R) >droSim1.chr2L 10237831 111 + 22036055 GAACAUUUU-CCAAACACUUCAGUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU-C-GAAUUGAGUGUUUUCGAGUUCA-GUGGCAU-GCUGAAGUGCUAAUGCCAUUGCAAC ((((.....-..((((......)))).......))))............((((((..-.-.....))))))......(((((-(((((((-((......))..))))))))).))) ( -25.54, z-score = -1.23, R) >droWil1.scaffold_180708 7721261 109 - 12563649 -----UUCUUUCAAGUGCUUCGUUUUAGAUUGCAUUCACUUUCUAUUCAAAAUUCGUAUUGUGUCAUAUUUUUUUUAUUUUGUAUGACAG-AGUCAAGUGCUAUUGCCACUGAAA- -----........(((((.((......))..)))))................((((.(((.((((((((............)))))))).-)))).(((((....).))))))).- ( -18.20, z-score = -0.77, R) >consensus GAACAUUUU_CCAAACACUUCAGUUUAAUGCAAGUUCUUCAUAAUAUCCGCACUCUU_U_GAAUUGAGUGUUUUCGAGUUCA_GUGGCAU_GCUGAAGUGCUAAUGCCAUUGCAAC ...............(((((((((...((((..................((((((..........))))))....(....).....)))).)))))))))................ (-18.74 = -18.03 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:10 2011