| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,510,947 – 6,511,074 |
| Length | 127 |
| Max. P | 0.978949 |
| Location | 6,510,947 – 6,510,999 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 92.36 |
| Shannon entropy | 0.14717 |
| G+C content | 0.30769 |
| Mean single sequence MFE | -8.60 |
| Consensus MFE | -7.09 |
| Energy contribution | -7.32 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807348 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6510947 52 + 22422827 UGGUGCGUUUUCCAAUUUGUUUUUCUUGUUGU-UUUUCGCAUUAAUUAACAAG (((((((.....((((..(.....)..)))).-....)))))))......... ( -9.30, z-score = -2.48, R) >droSim1.chrX 5115584 52 + 17042790 UGGUGCGUUUUCCAAUUUGUUUUUCUUGUUGU-UUUUCGCAUUAAUUAACAAG (((((((.....((((..(.....)..)))).-....)))))))......... ( -9.30, z-score = -2.48, R) >droSec1.super_4 5885700 52 - 6179234 UGGUGCGUUUUCCAAUUUGUUUUUCUUGUUGU-UUUUCGCAUUAAUUAACAAG (((((((.....((((..(.....)..)))).-....)))))))......... ( -9.30, z-score = -2.48, R) >droYak2.chrX 2474395 52 + 21770863 UGGUGCGUUUUCCAAUUUGUUUUUCUUGUUGU-UUUUCGCAUUAAUUAACAAG (((((((.....((((..(.....)..)))).-....)))))))......... ( -9.30, z-score = -2.48, R) >droEre2.scaffold_4690 15438377 52 + 18748788 UGGUGCGUUUUCCAAUUUGUUUUUCUUGUUGU-UUUUCGCAUUAAUUAACAAG (((((((.....((((..(.....)..)))).-....)))))))......... ( -9.30, z-score = -2.48, R) >droMoj3.scaffold_6359 4316464 52 + 4525533 UGGUGCGUUUUUUA-UUUGUUGUUUUCGUAUUGCCUUUGCAUUAAUUAACAAG ..............-....(((((....((.(((....))).))...))))). ( -5.10, z-score = 0.32, R) >consensus UGGUGCGUUUUCCAAUUUGUUUUUCUUGUUGU_UUUUCGCAUUAAUUAACAAG (((((((.....((((..(.....)..))))......)))))))......... ( -7.09 = -7.32 + 0.22)
| Location | 6,510,999 – 6,511,074 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 97.02 |
| Shannon entropy | 0.05145 |
| G+C content | 0.52311 |
| Mean single sequence MFE | -10.39 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.30 |
| Structure conservation index | 1.09 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.978949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6510999 75 - 22422827 GACAUGAGCAAGCCAUUAACCCAUUACUGACCCCAAAACCGGUCACCUAUCAACACACUCGCGCGUCGCGUUCAC ....(((((..................(((((........)))))...............(((...)))))))). ( -12.80, z-score = -1.43, R) >droSim1.chrX 5115636 73 - 17042790 GACAUGAGCAAGCCAUUAACCCAUUACUGACCCCAAAACCGGUCACCUAUCAACAAACUCGCGC--CGCGUUCAC ....(((((..................(((((........)))))...............((..--.))))))). ( -10.40, z-score = -1.28, R) >droSec1.super_4 5885752 73 + 6179234 GACAUGAGCAAGCCAUUAACCCAUUACUGACCCCAAAACCGGUCACCUAUCAACAAACUCGCGC--CGCGUUCAC ....(((((..................(((((........)))))...............((..--.))))))). ( -10.40, z-score = -1.28, R) >droYak2.chrX 2474447 73 - 21770863 GACAUAAGCAAGCCAUUAACCCAUUACUGACCCCAAAACCGGUCACCUAUCAACACACUCGCGC--CGCGUUCAC .......((..((..............(((((........)))))...............))..--.))...... ( -7.95, z-score = -0.73, R) >droEre2.scaffold_4690 15438429 73 - 18748788 GACAUGAGCAAGCCAUUAACCCAUUACUGACCCCAAAACCGGUCACCUAUCAACACACUCGCAC--CGCGUUCAC ....(((((..................(((((........)))))...............((..--.))))))). ( -10.40, z-score = -1.81, R) >consensus GACAUGAGCAAGCCAUUAACCCAUUACUGACCCCAAAACCGGUCACCUAUCAACACACUCGCGC__CGCGUUCAC ....(((((..................(((((........)))))...............((.....))))))). (-11.30 = -11.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:18 2011