| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,510,204 – 6,510,303 |
| Length | 99 |
| Max. P | 0.902458 |
| Location | 6,510,204 – 6,510,303 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.69 |
| Shannon entropy | 0.25372 |
| G+C content | 0.37300 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.68 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6510204 99 + 22422827 UAAAUCUUCUCGCCACGAUUCUUUGCAAGUUCAGUUGCAGUUUCAAUUGCAUAAACGUAUCUAAUGUAGUUGGUGGGGCUUAAGUGGAUUUUAUGUAUG---- .((((((.(((.((((......((((((......))))))...(((((((((...........))))))))))))).)....)).))))))........---- ( -21.70, z-score = -1.04, R) >droSim1.chrX 5114865 101 + 17042790 UAAAUCUUCUCGCCUCGAUUCUUUGCAAGU--AGUUGCAGUUUCAAUUGCAUAAACGUAACUUAUGUAAUUGGUGGGGGUUAAGUGGAUUUUAUGUACAUAUG .((((((.((.(((((.((...((((((..--..))))))...(((((((((((.......))))))))))))).)))))..)).))))))............ ( -25.30, z-score = -2.40, R) >droSec1.super_4 5884979 93 - 6179234 UAAAUCUUCUCGCCUCGAUUCUUUGCAAGA--AGUUGCAGUUUCAAUUGCAUAAACGUAUCUUAUGUAGUUGGUGGGGGUUAAGUGGAUUUUAUG-------- .((((((.((.(((((.((...((((((..--..))))))...(((((((((((.......))))))))))))).)))))..)).))))))....-------- ( -25.30, z-score = -2.91, R) >droYak2.chrX 2473713 87 + 21770863 UAAAUCUUCUCGCCUCGAUUCUUUGCAAGU--AGUUGCAGUUUCAAUUGCAUAAAAGUA-----UGUAGUUGG---GGGUUAAGUGGAUUUUAUACU------ .((((((.((.(((((......((((((..--..))))))...((((((((((....))-----)))))))))---))))..)).))))))......------ ( -23.80, z-score = -3.19, R) >droEre2.scaffold_4690 15437590 92 + 18748788 UAAAUCUUCUCGCCUCGAUUCUUUGCAAGU--AGCUGCAGUUUCAAUUGCAUAAACCUAUGC-AUGUAGUUGG--GGGGUUAAGUGGGUUUUAUAUG------ .((((((.(((.((((((((...((((((.--...((((((....)))))).....)).)))-)...))))))--)).)...)).))))))......------ ( -22.00, z-score = -0.92, R) >consensus UAAAUCUUCUCGCCUCGAUUCUUUGCAAGU__AGUUGCAGUUUCAAUUGCAUAAACGUAUCU_AUGUAGUUGGUGGGGGUUAAGUGGAUUUUAUGUA______ .((((((.((.(((((......((((((......))))))..((((((((((...........))))))))))..)))))..)).))))))............ (-18.00 = -18.68 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:17 2011