| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,495,794 – 6,495,899 |
| Length | 105 |
| Max. P | 0.524718 |
| Location | 6,495,794 – 6,495,899 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.33 |
| Shannon entropy | 0.29631 |
| G+C content | 0.63262 |
| Mean single sequence MFE | -18.37 |
| Consensus MFE | -13.51 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6495794 105 + 22422827 CCAUCGCGUAUAGCGGUCGCAACGCAUGCGCCUCUCCUCCCACAGCUCGCCGCAUCUCUCUCUCUUGUGAGCUCCCGCUCUUUCCCCUACCCUAUCCCUUUACCA .....((((((.(((.......)))))))))............(((((((................)))))))................................ ( -19.69, z-score = -2.09, R) >droSim1.chrX 5103080 101 + 17042790 CCAUCGCGUAUAGCGGUCGCAACGCAUGCGCCUCUCCUCCCACAGCUCGCCGCAUCUCUCUCUC--GUGCGCCCCCGCUCUUUCCCCUACCCUUUCUCUUUCC-- .....((((((.(((.......)))))))))............(((..(.(((((.........--))))).)...)))........................-- ( -17.80, z-score = -1.81, R) >droYak2.chrX 2462498 83 + 21770863 CCAUCGCGUAAAGCGGUCGCAACGCAUGCGCCUCUCCUCCCACGGCUCGCGGCAUCUCUCUC----GUGCGCCCCGUCUCUUUCCCA------------------ .....(((((..(((.......))).)))))............(((.(((((........))----))).)))..............------------------ ( -19.70, z-score = -0.25, R) >droEre2.scaffold_4690 15426482 82 + 18748788 CCAUCGCGUAUAGCGGUCGCAACGCAUGCGCCUCUCCUCCCACAGUUCGCCGCAUCUCUCUC----GUGCGCCCC-UCUCUUUCCCA------------------ .....((((((.(((.......)))))))))...................(((((.......----)))))....-...........------------------ ( -16.30, z-score = -1.43, R) >consensus CCAUCGCGUAUAGCGGUCGCAACGCAUGCGCCUCUCCUCCCACAGCUCGCCGCAUCUCUCUC____GUGCGCCCCCGCUCUUUCCCA__________________ .....((((((((.((.((((.....)))))).)).........((.....)).............))))))................................. (-13.51 = -13.83 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:16 2011