| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,443,135 – 10,443,234 |
| Length | 99 |
| Max. P | 0.746688 |
| Location | 10,443,135 – 10,443,234 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Shannon entropy | 0.33852 |
| G+C content | 0.39219 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -11.83 |
| Energy contribution | -12.07 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10443135 99 - 23011544 AUUGGUUUGUCCCACAACG----------AAAAACCCGAAUCAAUUAUACGCAUUUCCCCCAAAAUGCAAUUAAGCCCAUAUUCAAAAU--GUCUUCGGACCUUUGAAGAG----- ...((((((........((----------.......))............((((((......))))))...))))))....((((((..--(((....))).))))))...----- ( -18.20, z-score = -2.26, R) >droSim1.chr2L 10237245 99 - 22036055 AUUGGUUUGUCCCACAACG----------AGAAACCCGAAUCAAUUAUACGCAUUUCCCCCAAAAUGCAAUUAAGCCCAUAUUCAAAAU--GUCUUCGGACCUUUGAAGAG----- ...(((((.((.......)----------).)))))....((........((((((......)))))).............((((((..--(((....))).)))))))).----- ( -20.00, z-score = -2.63, R) >droSec1.super_3 5871015 99 - 7220098 AUUGGUUUGUCCCACAACG----------AGAAACCCGAAUCAAUUAUACGCAUUUCCCCCAAAAUGCAAUUAAGCCCAUAUUCAAAAU--GUCUUCGGACCUUUGAAGAG----- ...(((((.((.......)----------).)))))....((........((((((......)))))).............((((((..--(((....))).)))))))).----- ( -20.00, z-score = -2.63, R) >droEre2.scaffold_4929 11652204 99 + 26641161 AUUGGUCUGUCCCACAACG----------A-AAGCCCGAAUCAAUUAAACGCGUUUC--CCAAAAUGCAAUUAAGCCCAUAUUCAAAAU--GUCUUCGGACCUUUGAAGAGGCC-- .((((.((.((.......)----------)-.)).))))...........((((((.--...))))))......(((....((((((..--(((....))).))))))..))).-- ( -21.70, z-score = -1.79, R) >droAna3.scaffold_12916 14284552 114 - 16180835 AUUGGUUUGUCCCAAAAUGCAUUCCGAACAAAAAUUCAAAUCGAUUAUACACUUUUA--UGGAAAAGCAAUUAAGCUUUUAUUCAAAACAGACCCUGAGACCUUUUAAUGUCAGAG ...(((((((.(((...........(((......))).....(......).......--)))((((((......)))))).......)))))))((((.(........).)))).. ( -16.10, z-score = -0.12, R) >consensus AUUGGUUUGUCCCACAACG__________AAAAACCCGAAUCAAUUAUACGCAUUUCCCCCAAAAUGCAAUUAAGCCCAUAUUCAAAAU__GUCUUCGGACCUUUGAAGAG_____ (((((((((...........................))))))))).....((((((......)))))).............((((((....(((....))).))))))........ (-11.83 = -12.07 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:09 2011