| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,493,172 – 6,493,291 |
| Length | 119 |
| Max. P | 0.783619 |
| Location | 6,493,172 – 6,493,291 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.72 |
| Shannon entropy | 0.57178 |
| G+C content | 0.59875 |
| Mean single sequence MFE | -44.22 |
| Consensus MFE | -19.78 |
| Energy contribution | -20.88 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6493172 119 + 22422827 CAUCAAUGACCUGACCACGCUCUGUGAAGCAACAAAUGCCCAGGGUGCCGA-GGGUGCUGAGAGUGUGGAGAAUUCUCGAGAGGCAUCCUCCUCAGCAGCCGCAAGGUCAGGUCAGGAGG ......((((((((((.(((((((.(..(((.....)))))))))))..(.-((.(((((((......(((....)))..((((...))))))))))).)).)..))))))))))..... ( -52.70, z-score = -3.13, R) >droSim1.chrX 5100479 113 + 17042790 CACCAAUGACCUGGCCACGCCCUGUGAAGCAACGAAUG------GUGCCGA-GGGUGGCGAGAGUGCGGAGAAUUCUCGAGAGGCAUCCUCCUCAGCAGCCGCACGGUCAGGUCAGGAGG ..((..((((((((((.((((((.((..((........------))..)))-)))))......((((((((....)))..((((......))))......)))))))))))))))...)) ( -48.10, z-score = -1.84, R) >droSec1.super_4 5871094 113 - 6179234 CACCAAUGACCUGGCCACGCCCUGUGAAGCAACGAAUG------GUGCCGA-GGGUGCCGAGAGUGCUGAGAAUUCUCGAGAGGCAUCCUCCUCAGAAGCCACAAGGUCAGGUCAGGAGG ..((..((((((((((.((((.(((......)))...)------)))..((-(((((((((((((.......))))))....)))))))))..............))))))))))...)) ( -46.40, z-score = -2.43, R) >droYak2.chrX 2459742 116 + 21770863 CGCCAAUGGACUGGCCCCACCCUGUGGAACAUCGAAUGG----GGAAUGGUUGGGUGCCGAUGGUGCAGAGAAUUCUCGGGAGGCAUCCUCCUCACCAGCCGCAAGGUCAGGUCAGGAGG .(((..((.((((((((((((((((..........))))----))......)))).)))...))).))(((....)))....)))..((((((.(((.(((....)))..))).)))))) ( -47.50, z-score = -0.66, R) >droEre2.scaffold_4690 15424428 116 + 18748788 CACCAAUGGACUGGCCAGGCCCUGUGGCACAUCGAAUGC----GGAAUGGAUGACUGACGAUUGUGACGAAAACUCUCGAGAGGCAUCCUCCUCACCAGCCGCAAGGACAGGUCAGGAGG ..........((((((...((.((((((.(((...))).----(((..(((((.((..(((..((.......))..)))..)).))))))))......)))))).))...)))))).... ( -37.10, z-score = -0.11, R) >droAna3.scaffold_12929 3060882 113 + 3277472 CAGUGCAAGGCAGGCUACACCCUGCCGCACCCCCGAUUUU----GUCCUUAGCGACAGCGAUAUAUCACAGAUCCUCGGAGAUCCAGCCUCCUCACCGGC-ACGGAGUCAGCAUGGCG-- ..((((..((((((......))))))........((((((----((((...((....))..................((((.......)))).....)).-)))))))).))))....-- ( -33.50, z-score = -0.65, R) >consensus CACCAAUGACCUGGCCACGCCCUGUGAAACAACGAAUG______GUGCCGA_GGGUGCCGAGAGUGCAGAGAAUUCUCGAGAGGCAUCCUCCUCACCAGCCGCAAGGUCAGGUCAGGAGG ..((..((((((((((.(((((..............................)))))......(((..(((....)))..((((......))))......)))..))))))))))))... (-19.78 = -20.88 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:13 2011