| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,482,619 – 6,482,709 |
| Length | 90 |
| Max. P | 0.942312 |
| Location | 6,482,619 – 6,482,709 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.07142 |
| G+C content | 0.37407 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -19.40 |
| Energy contribution | -20.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6482619 90 - 22422827 CAUAGGCGUAGGAUUAUUAUAGAUUAUUGUGGAUUCAAAUGGUUUAUGCUGGAUUCAUGGGGUGUGUCUAAACACAAAAUGCCAAAGGGG ....(((((.(((((..(((((((((((.........)))))))))))...))))).....((((......))))...)))))....... ( -21.20, z-score = -1.68, R) >droSim1.chrX 5090013 90 - 17042790 CAUAGGCGUAGGAUUAUUAUAGAUUAUCAUGAAUUCAAAUGGUUUAUGGGGUAUUCAUGGGGUGUGUCUAAACACAAAAUGCCAAAGGGG ....(((((.((((..(((((((((((..((....)).)))))))))))...)))).....((((......))))...)))))....... ( -20.20, z-score = -1.99, R) >droSec1.super_4 5860769 90 + 6179234 CAUAGGCGUAGGAUUAUUAUAGAUUAUUAUGAAUUCAAAUGGUUUAUGGGGUAUUCAUGGGGUGUGUCUAAACACAAAAUGCCAAAGGGU ....(((((.((((..((((((((((((.((....))))))))))))))...)))).....((((......))))...)))))....... ( -21.80, z-score = -2.79, R) >consensus CAUAGGCGUAGGAUUAUUAUAGAUUAUUAUGAAUUCAAAUGGUUUAUGGGGUAUUCAUGGGGUGUGUCUAAACACAAAAUGCCAAAGGGG ....(((((.((((..((((((((((((.((....))))))))))))))...)))).....((((......))))...)))))....... (-19.40 = -20.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:09 2011