| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,468,925 – 6,468,984 |
| Length | 59 |
| Max. P | 0.509629 |
| Location | 6,468,925 – 6,468,984 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 74.81 |
| Shannon entropy | 0.40961 |
| G+C content | 0.45709 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -8.78 |
| Energy contribution | -10.12 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6468925 59 + 22422827 -----------AAUGGUCAGUCAAUGGCCAAGU-GCAGUUGAAAAAUCAGCUAACUGGCAAUGAUCGCUUU -----------...(((((.......((((.((-..((((((....)))))).))))))..)))))..... ( -17.30, z-score = -2.19, R) >droYak2.chrX 2435710 53 + 21770863 -----------------CAGUCAAUGGCCAAGU-GCAGUUGAAAAAUCAGCUACCUGGCAAUGAUCGCUUU -----------------..((((...((((.((-..((((((....)))))))).))))..))))...... ( -14.40, z-score = -1.53, R) >droEre2.scaffold_4690 15400261 53 + 18748788 -----------------CAGUCAAUGGCCAAGU-GCAGCUGAAAAAUCAGCUAACUGGCAAUGAUCGCUUU -----------------..((((...((((.((-..((((((....)))))).))))))..))))...... ( -17.90, z-score = -2.79, R) >droSec1.super_4 5847107 53 - 6179234 -----------------CAGUCAAUGGCCAAGU-GCAGUGUGCAAAUCAGCUAACUGGCAAUGAUCGCUUU -----------------..((((.((((....(-((.....))).....))))..))))............ ( -10.00, z-score = 1.02, R) >droSim1.chrX 5075841 53 + 17042790 -----------------CAGUCAAUGGCCAAGU-GCAGUUGAAAAAUCAGCUAACUGGCAAUGAUCGCUUU -----------------..((((...((((.((-..((((((....)))))).))))))..))))...... ( -15.50, z-score = -2.17, R) >droWil1.scaffold_180702 4392616 67 + 4511350 AGUGACCAGUCAAUGACCAACCAAUUGCCCAGUUGCAACUGGCAA--CUGGCAACUGGCAGCG--CAAUUU .(((.(((((...((......))..((((.((((((.....))))--)))))))))))...))--)..... ( -22.10, z-score = -1.74, R) >consensus _________________CAGUCAAUGGCCAAGU_GCAGUUGAAAAAUCAGCUAACUGGCAAUGAUCGCUUU ...................((((...(((.(((...((((((....)))))).))))))..))))...... ( -8.78 = -10.12 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:03 2011