| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,468,113 – 6,468,173 |
| Length | 60 |
| Max. P | 0.692361 |
| Location | 6,468,113 – 6,468,173 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 63.96 |
| Shannon entropy | 0.57275 |
| G+C content | 0.29295 |
| Mean single sequence MFE | -4.90 |
| Consensus MFE | -3.21 |
| Energy contribution | -3.27 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6468113 60 - 22422827 UUUAAACAAUACACACACUUAUAUUAUACCUUUUUGGAUUGGCAGAAUUAUGUUUUCUCG--- ...................................(((..((((......)))).)))..--- ( -2.40, z-score = 0.64, R) >droSim1.chrX 5075032 60 - 17042790 UUUAAACAAUACACACACUUAUACUAUACAUUUUGGGGAUGACAGAAUCAUGUUUUCUCG--- ...................................((((.((((......)))).)))).--- ( -7.30, z-score = -1.92, R) >droSec1.super_4 5846273 60 + 6179234 UUUAAACAAUAUACAUACUUAUACUAUACAUUUUGGGGAUGACAGAAUCAUGUUUACUCG--- ..................................(((...((((......))))..))).--- ( -5.40, z-score = -0.77, R) >droYak2.chrX 2434865 52 - 21770863 -----------UUUACAAAUAGCAUAUAUGUACAUAUAGGGGCAGAAUCGUGUUUUUUUUCAA -----------..........((.(((((....)))))...)).................... ( -4.50, z-score = -0.04, R) >consensus UUUAAACAAUACACACACUUAUACUAUACAUUUUGGGAAUGACAGAAUCAUGUUUUCUCG___ ...................................((((.((((......)))).)))).... ( -3.21 = -3.27 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:02 2011