| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,446,255 – 6,446,369 |
| Length | 114 |
| Max. P | 0.666921 |
| Location | 6,446,255 – 6,446,369 |
|---|---|
| Length | 114 |
| Sequences | 9 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 69.09 |
| Shannon entropy | 0.62800 |
| G+C content | 0.54184 |
| Mean single sequence MFE | -37.23 |
| Consensus MFE | -17.64 |
| Energy contribution | -18.67 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6446255 114 + 22422827 UGUGCAGACCUCCUCGGAGGUCAGUCCCGAUGGACGGGCCUAUCGUACCGAAACUCUGGCCAAAACAGAUGGUAAGUGACUAUUCGUUUU-GCUUGGUGGUAGCCCCCUUUGUCU--------------- ......((((((....))))))......((..((.(((.(((((..((((.......(((.(((((..(((((.....)))))..)))))-)))))))))))).))).))..)).--------------- ( -39.21, z-score = -1.38, R) >droEre2.scaffold_4690 15386083 113 + 18748788 UGUGCAGACCUCCUCGGAGGUCAGUCCCGAUGGACGGGCCUAUCGCACCGAAACUCUGGCCAAAACAGAUGGUAAGUGCUAAUACGUUUU-GCUUGGUGGUAGCCCC-UUUGUCU--------------- ......((((((....))))))......((..((.((((.((((((..((((((((((.......))))((((....))))....)))))-)....)))))))))).-))..)).--------------- ( -40.70, z-score = -1.80, R) >droYak2.chrX 2420324 114 + 21770863 UGUGCAGACCUCCUCGGAGGUCAGUCCGGAUGGACGGGCCUAUCGCACCGAAACUCUGGCCAAAACAGAUGGUAAGUGCAUAUCCGUUUUUGCUUGGUGAUAGCCCC-UUUGUCU--------------- .(..(.((((((....)))))).)..)(((..((.((((.((((((...........(((.(((((.((((((....)).)))).))))).)))..)))))))))).-))..)))--------------- ( -40.62, z-score = -1.65, R) >droAna3.scaffold_12929 3012541 130 + 3277472 UGUGCAGACCUCCUCGGAGGUGAGUCCCGAUGGCAGGGCCUAUCGCACCGAGACUCUGGCCAAGACAGACGGUAAGUUGCUCCAGACUGCGGUCUGAGGUCUGAGGUCUUCGGUGUUGGCUUCUAUGUGU .(..((.(((((....)))))(((((..((((((...))).)))((((((((((((.((((....(((((.(((.(((......)))))).))))).)))).)).))).))))))).)))))...))..) ( -50.30, z-score = -0.31, R) >dp4.chrXL_group1a 5601193 105 - 9151740 UGUGCAGACCUCCUCGGAGGUCAGUCCCGAUGGCAGGGCCUUCCGCACGGAAACUCUGGCCAAGACAGAUGGUAAGUCCUGACAACCGUU----------CUGUUCUCUCUGUCU--------------- ......((((((....)))))).........(((((((((((((....)))).....))))..((((((((((..((....)).)))).)----------)))))....))))).--------------- ( -37.10, z-score = -0.87, R) >droPer1.super_11 2757628 105 - 2846995 UGUGCAGACCUCCUCGGAGGUCAGUCCCGAUGGCAGGGCCUUCCGCACGGAAACUCUGGCCAAGACAGAUGGUAAGUCCUGACCACCGUU----------CUGUUCUCUCUGUCU--------------- ......((((((....)))))).........(((((((((((((....)))).....))))..((((((((((..((....)).)))).)----------)))))....))))).--------------- ( -37.20, z-score = -0.71, R) >droMoj3.scaffold_6328 1442758 118 + 4453435 UGUGCAGACCUCGUCGGAGGUGAGUCCCGAUGGACGUGCCUAUCGCACCGAAACUCUGGCCAAAACUGAUGGUAAGCUGAAUCAUUCUCAAUUUUCGAUACAGUAAUACCCUGUACCC------------ .((((((.....(((((((....((((....))))((((.....)))).....)))))))..........((((.((((.(((.............))).))))..))))))))))..------------ ( -34.42, z-score = -1.80, R) >droVir3.scaffold_12928 483219 113 + 7717345 UGUGCAGACCUCCUCGGAGGUGAGUCCCGAUGGACGCGCCUAUCGCACCGAGACGCUGGCCAAAACAGAUGGUAAGUCCAUUUUG--UGUAAUUGAAAACUAAUCCCGUUUUUUU--------------- ((..((((....((((((((((.((((....)))).)))))......)))))..(((.((((.......)))).)))....))))--..))...((((((.......))))))..--------------- ( -30.20, z-score = -0.63, R) >droGri2.scaffold_15203 6906980 103 + 11997470 UGUCCAGACAUCUUCGGAGGUGUCGCCCGAUGGCCGAGCCUAUCGCACCGAAACUCUGGCCAAAACCGAUGGUAAG---------------UUCUCGUCACAAUAAUCACUUGGUUCC------------ ......(((((((....)))))))..((((((((((((....(((...)))..))).))))).....(((((....---------------...)))))...........))))....------------ ( -25.30, z-score = 0.44, R) >consensus UGUGCAGACCUCCUCGGAGGUCAGUCCCGAUGGACGGGCCUAUCGCACCGAAACUCUGGCCAAAACAGAUGGUAAGUCCAUACACGCUUU_GUUUGGUGACAGUCCUCUUUGUCU_______________ .((((..(((((....))))).......(((((......))))))))).......((.((((.......)))).))...................................................... (-17.64 = -18.67 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:21:01 2011