| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,445,271 – 6,445,366 |
| Length | 95 |
| Max. P | 0.910624 |
| Location | 6,445,271 – 6,445,366 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.24 |
| Shannon entropy | 0.21757 |
| G+C content | 0.38726 |
| Mean single sequence MFE | -24.68 |
| Consensus MFE | -15.26 |
| Energy contribution | -17.45 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6445271 95 + 22422827 CGUAAAUGGAGCAAAUUCCCGUAAACUGAAUUCGGAUUUAGGUGACUCUCUUGCGUGUCAUCGAUUCUUUGUAUACUUGUUGCUCUAUUUCUACA .(((((((((((((....(((...........))).....((((((.(......).)))))).................))))))))))..))). ( -23.40, z-score = -2.55, R) >droEre2.scaffold_4690 15385095 94 + 18748788 CGUAAAUGAGGAGAAUUCCCGCAAACUGAAAUCGGAUAUAGGCGGGUCUUAUGCCUGUCAUCGAUUCCUUAUUUACUGUAUGCUCUAUUUUUAU- .((((((((((((............(((....))).....(((((((.....))))))).....))))))))))))..................- ( -25.80, z-score = -2.36, R) >droYak2.chrX 2419305 94 + 21770863 CGUAAAUGUAGAGAAUUCCCGUAAACUGAAAUCGGAUUUAGGCGGGUCUUAUGCCUGUCAUCGAUUCCUUGUUUACUUUAUGCUCUAUUUUUAU- .(((((.((((((.......((((((.(.((((((...((((((.......))))))...)))))).)..))))))......)))))).)))))- ( -26.72, z-score = -3.55, R) >droSec1.super_4 5831905 94 - 6179234 CGUAAAUGGAGCGAAUUCCCGUAAACUGAAAUCGGAUUUAGCCGACUCUUAUGCCUGUCAUCGAUUCUUUGUUUACUUGUUGCUCUAUUUUUAC- ...(((((((((((......((((((.((((((((......))(((..........)))...)))).)).))))))...)))))))))))....- ( -22.80, z-score = -2.77, R) >consensus CGUAAAUGGAGAGAAUUCCCGUAAACUGAAAUCGGAUUUAGGCGACUCUUAUGCCUGUCAUCGAUUCCUUGUUUACUUGAUGCUCUAUUUUUAC_ ...(((((((((((......((((((.(((.((((...((((((.......))))))...)))))))...))))))...)))))))))))..... (-15.26 = -17.45 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:57 2011