| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,430,646 – 6,430,763 |
| Length | 117 |
| Max. P | 0.571553 |
| Location | 6,430,646 – 6,430,763 |
|---|---|
| Length | 117 |
| Sequences | 14 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.71 |
| Shannon entropy | 0.47808 |
| G+C content | 0.59272 |
| Mean single sequence MFE | -47.60 |
| Consensus MFE | -19.42 |
| Energy contribution | -19.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6430646 117 - 22422827 UCAGCGAAAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCACAGCGGU-GGCUCCACCACCUUGACAAAACGCGAUAUCAUAU-- ...(((....(.((((...)))).)(((((((.(((((((.(((((....)))))...))))))))))))(((((((....))-))).)).))............)))..........-- ( -45.50, z-score = -1.39, R) >droGri2.scaffold_15203 6887911 117 - 11997470 UCAACGAUAUGGCAGGAUUCUGUGCUGAAUGCACCAACUCUUCCAUGCACAUGGGGCAGGGCUGGGCAUUCGGCCAGAGGGGC-GGCUCAACGACCUUUACAAAACGCGAUAUCAUAU-- .....(((((.((....(((((.(((((((((.(((.(((((((((....)))))..)))).)))))))))))))))))((((-(......)).))).........)).)))))....-- ( -47.50, z-score = -4.43, R) >droVir3.scaffold_12928 459629 117 - 7717345 UCAGCGAUAUGGCUGGAUUCUGGGCCGAGUGCACCAGCUCCUCCAUGCACAUGGGGCAGGGCUGUGCGUUGGGCCACAGCGGU-GGCUCAACGACCUUCACGAAGCGCGAUAUCAUGU-- .....(((((((((.(....).))))..((((..((((((((((((....))))))..))))))..(((((((((((....))-)))))))))...........)))).)))))....-- ( -50.50, z-score = -1.53, R) >droMoj3.scaffold_6328 1417694 117 - 4453435 UCAGCGAUAUGGCAGGAUUUUGUGCCGAAUGCACCAGCUCCUCCAUGCACAUGGGGCAGGGCUGGGCGUUUGGCCACAGCGGC-GGCUCGACAACCUUAACAAAGCGCGAUAUCAUAU-- .....(((((.((......(((((((((((((.(((((((((((((....))))))..))))))))))))))).))))).((.-.(.....)..))..........)).)))))....-- ( -47.50, z-score = -2.47, R) >droAna3.scaffold_12929 2986928 117 - 3277472 UGAGCGAGAUGGCCGGAUUCUGAGCCGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCGUUGGGCCAUAGCGGA-GGCUCCACCACCUUCACGAAUCUCGAUAUCAUGU-- (((.((((((((((.(((.((.((((((((......)))).(((((....)))))....)))).)).))).))))...(.(((-((........))))).)..))))))...)))...-- ( -45.90, z-score = -0.93, R) >droPer1.super_11 2737405 117 + 2846995 UCAGCGAUAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCAUAGGGGC-GGCUCUACCACCUUCACGAAUCGCGAUAUCAUGU-- .....(((((.((..(((((.(((.(((((((.(((((((.(((((....)))))...))))))))))))(((((........-)))))..)).)))....))))))).)))))....-- ( -48.80, z-score = -1.78, R) >dp4.chrXL_group1a 5581197 117 + 9151740 UCAGCGAUAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCAUAGGGGC-GGCUCUACCACCUUCACGAAUCGCGAUAUCAUGU-- .....(((((.((..(((((.(((.(((((((.(((((((.(((((....)))))...))))))))))))(((((........-)))))..)).)))....))))))).)))))....-- ( -48.80, z-score = -1.78, R) >droWil1.scaffold_180702 4362165 117 - 4511350 UCAAUGAGAUGGCAGGAUUUUGUACUGAAUGGACCAGCUCCUCCAUGCACAUGGGACAUGGCUGGGCGUUUGGCCAGAGUGGU-GGUUCAACGACUUUGACAAAGCGCGAUAUCAUAU-- ...((((.((.((....((((((.(..((((..((((((..(((((....)))))....)))))).))))..).((((((.((-......)).)))))))))))).)).)).))))..-- ( -37.00, z-score = -0.98, R) >droSim1.chrX 5047158 117 - 17042790 UCAGCGAUAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCACAGCGGU-GGCUCCACCACCUUGACAAAACGCGAUAUCAUAU-- .....(((((.((.....((.(((.(((((((.(((((((.(((((....)))))...))))))))))))(((((((....))-))).)).)).))).))......)).)))))....-- ( -49.50, z-score = -2.43, R) >droSec1.super_4 5817353 117 + 6179234 UCAGCGAUAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCACAGUGGU-GGCUCCACCACCUUGACAAAACGCGAUAUCAUAU-- .....(((((.((.....((.(((.(((((((.(((((((.(((((....)))))...))))))))))))(((((((....))-))).)).)).))).))......)).)))))....-- ( -49.50, z-score = -2.29, R) >droYak2.chrX 2403257 117 - 21770863 UCAGCGAAAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACACGGUUGGGCAUUGGGCCACAGCGGU-GGCUCCACCACCUUCACAAAUCGCGAUAUCAUAU-- ...((((..(((((.(((.((.((((((((......)))))(((((....))))).....))).)).))).)))))....(((-((.....)))))........))))..........-- ( -42.50, z-score = -0.89, R) >droEre2.scaffold_4690 15370519 117 - 18748788 UCAGCGAUAUGGCCGGAUUUUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCACAGCGGU-GGCUCCACCACCUUGACGAAUCGCGAUAUCAUAU-- .....(((((.((..(((((.(((.(((((((.(((((((.(((((....)))))...))))))))))))(((((((....))-))).)).)).)))....))))))).)))))....-- ( -50.90, z-score = -2.67, R) >anoGam1.chrX 17047552 120 - 22145176 CGAGCGCCACGUUCACCUUCUGGCCGCCGGGCCGCAGCUCCUCCAUGCACAUCGGACACGGUUGGGCCCGGGGCCAGCGGGGCGGGAUCGGCCACCUGCACGUACUUCGCGAUCACCUUC .((.(((.((((...(((.((((((.(((((((.(((((..(((.........)))...)))))))))))))))))).)))(((((........))))))))).....))).))...... ( -56.60, z-score = -1.86, R) >triCas2.ChLG8 7792881 108 + 15773733 ------ACGCCACCACGACUAACGUGGGGCGCAGGGGCUGCC---GGCACGUGGGGCAGGGCUGUCUGGGGGCCCACUCGCAC-GGUUGGGACACCCGCACGUAUUUCGAGAUUAUUG-- ------..(((.(((((.....))))))))((.(((..(.((---(((.(((((((..(((((.......))))).))).)))-)))))).)..)))))...................-- ( -45.90, z-score = -0.73, R) >consensus UCAGCGAUAUGGCCGGAUUCUGGGCGGAGUGCACCAGCUCCUCCAUGCACAUGGGACAGGGCUGGGCAUUGGGCCACAGCGGU_GGCUCCACCACCUUCACAAAUCGCGAUAUCAUAU__ ...........(((........)))(((((((.((((((..(((((....)))))....))))))))))).((((.........))))...))........................... (-19.42 = -19.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:55 2011