| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,428,453 – 6,428,562 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 6,428,453 – 6,428,562 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 92.75 |
| Shannon entropy | 0.12769 |
| G+C content | 0.70275 |
| Mean single sequence MFE | -52.24 |
| Consensus MFE | -45.98 |
| Energy contribution | -46.46 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 6428453 109 - 22422827 GGGCGGCCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCGCACUUCCGGCGCUG ..(((((...(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..)))))))))..)))))............. ( -52.80, z-score = -1.00, R) >droEre2.scaffold_4690 15368713 109 - 18748788 GGGCGGUCCACCGGAUCCGGAGGUGGACAGGGGCAUGGUGCCACAACUGGAGGCGGCGUUUCCUCCGCCACCGGGAACGACGGAUCCUGAUGCCGCACUUCCGCCGCUG .(((((((((((.........)))))))...(((.....)))......((((((((((((...((((....((....)).))))....)))))))).)))))))).... ( -48.90, z-score = -0.27, R) >droYak2.chrX 2401086 109 - 21770863 GGGCGGACCACCGGAUCCGGCGGUGGACAUUGGCAUGGUGGCACAACUGAAGGCGCUGUUUCCACCGCCAUCGGAAACGACGGAUCCGGAUGCCGCACUUCCGGCGCUG .(((......(((((((((((((((((.((.(((.((((......))))...)).).)).))))))))).(((....))).))))))))..((((......))))))). ( -55.30, z-score = -3.54, R) >droSec1.super_4 5815170 109 + 6179234 GGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCGCACUUCCGGCGCUG .(((......(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..)))))))))..((((......))))))). ( -52.10, z-score = -0.96, R) >droSim1.chrX 5044986 109 - 17042790 GGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCGCACUUCCGGCGCUG .(((......(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..)))))))))..((((......))))))). ( -52.10, z-score = -0.96, R) >consensus GGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCGCACUUCCGGCGCUG ..(((((...(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..)))))))))..)))))............. (-45.98 = -46.46 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:54 2011