| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,418,759 – 6,418,855 |
| Length | 96 |
| Max. P | 0.813010 |
| Location | 6,418,759 – 6,418,855 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.42 |
| Shannon entropy | 0.55577 |
| G+C content | 0.52578 |
| Mean single sequence MFE | -31.99 |
| Consensus MFE | -15.42 |
| Energy contribution | -15.04 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6418759 96 + 22422827 UGCGGGCUGCCUGCAAGAAAUGCGGCUACGCCGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGCGCACCAAUCGCAUAGACCGCAU----------------- ((((((((((((...(((((((((((......((((....)))).......))))))..)))))..)))).)))((.......)).....))))).----------------- ( -37.82, z-score = -3.28, R) >droAna3.scaffold_12929 2974201 97 + 3277472 UGCGGGCCGCCUGCAAGAAAUGUGGCUACGCCGGUCACCUGACCUACCAAUGCCGCAAUUUCCUCAAGGUAACCAAG--UGCAAACAAUGUAACCGGUU-------------- ((((((...)))))).((((((((((......((((....)))).......))))).)))))........((((...--((((.....))))...))))-------------- ( -28.42, z-score = -0.58, R) >droEre2.scaffold_4690 15358743 94 + 18748788 UGAGAGCAGCCUGCAAGAAAUGCGGCUACGCCGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGUGCAAAGAGCGCAUUGUGCUU------------------- ...(((((((((...(((((((((((......((((....)))).......))))))..)))))..))))..((((.....))))....)))))------------------- ( -34.12, z-score = -2.42, R) >droYak2.chrX 2391026 92 + 21770863 UGAGGGCGGCCUGCAAGAAAUGCGGCUACGCCGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGUGCAAAGACCGCAUGUCUU--------------------- ..(((((.((((...(((((((((((......((((....)))).......))))))..)))))..))))..((((.......)))))))))--------------------- ( -31.22, z-score = -1.42, R) >droSec1.super_4 5805561 96 - 6179234 UGCGGGCAGCCUGCAAGAAAUGUGGCUACGCCGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGCGCACCAAUCGCAUAGACCGCAU----------------- (((((((.((((...(((((((((((......((((....)))).......))))))..)))))..))))..))((.......)).....))))).----------------- ( -33.42, z-score = -2.00, R) >droPer1.super_11 2725022 98 - 2846995 UGCGAGCGGCCUGCAAAAAAUGCGGCUACGCAGGUCACCUGACUUACCAAUGCCGGAAUUUUCUCAAGGUAAGCAAA--AGCCG---CAUGUUU-GGCAGCGUU--------- ....((((..((((.(((.((((((((..(((((((....))))).....((((.((......))..)))).))...--)))))---))).)))-.))))))))--------- ( -31.90, z-score = -0.53, R) >dp4.chrXL_group1a 5568830 98 - 9151740 UGCGAGCGGCCUGCAAAAAAUGCGGCUACGCAGGUCACCUGACUUACCAAUGCCGGAAUUUUCUCAAGGUAAGCAAA--AGCCG---CAUGUUU-GGCAGCGUU--------- ....((((..((((.(((.((((((((..(((((((....))))).....((((.((......))..)))).))...--)))))---))).)))-.))))))))--------- ( -31.90, z-score = -0.53, R) >droWil1.scaffold_180702 4349414 104 + 4511350 UGCGGGCAGCAUGCAAAAAAUGCGGCUACGCAGGUCACCUGACCUAUCAGUGCCGGAAUUUUCUCAAGGUAAG-AAA--AACAAACAAGUCUGUAAACUAAAUGCCG------ (((((((.((((.......))))(((.((..(((((....)))))....)))))....((((((.......))-)))--)........)))))))............------ ( -27.10, z-score = -1.22, R) >droVir3.scaffold_12928 5542797 98 + 7717345 UGCGAGCGGCCUGCAAGAAGUGCGGCUACGCAGGUCACCUGACAUACCAAUGCCGCAAUUUUCUCAAGGUAAGCAUA--AGCCG--CAAAGCGA-AACUAAAU---------- ((((.((.((.(((.((((.((((((.......(((....)))........))))))...))))....))).))...--.))))--))......-........---------- ( -29.06, z-score = -0.90, R) >droMoj3.scaffold_6359 4067658 104 + 4525533 UGCGAGCGGCAUGCAAGAAGUGCGGCUACGCGGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGCAAA--AGCCG--CUAUGCACUGGCAAAAUGACAA----- (((.((..((((((.((((.((((((...(..((((....))))..)....))))))...))))...(((.......--.))))--).)))).)).))).........----- ( -36.20, z-score = -1.48, R) >droGri2.scaffold_15203 5947614 112 - 11997470 UGAGAGCGGCCUGCAAGAAAUGCGGCUACGCUGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGCCGAU-AGCCGAACAAAACACACACUGAGCAGACAGACAG ......((((.(((.(((((((((((......((((....)))).......))))))..)))))....))).))))..-..................(((......))).... ( -30.72, z-score = -1.53, R) >consensus UGCGAGCGGCCUGCAAGAAAUGCGGCUACGCCGGUCACCUGACCUACCAAUGCCGCAAUUUUCUCAAGGUAAGCAAA__AGCCG_AUAAUGCGC_G_C_______________ .....((.((((....(((((.((((......((((....)))).......))))..)))))....))))..))....................................... (-15.42 = -15.04 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:53 2011