Locus 13410

Sequence ID	dm3.chrX
Location	6,397,743 – 6,397,811
Length	68
Max. P	0.654832

overview

Window 3

Location	6,397,743 – 6,397,811
Length	68
Sequences	9
Columns	74
Reading direction	reverse
Mean pairwise identity	81.36
Shannon entropy	0.38950
G+C content	0.43485
Mean single sequence MFE	-19.34
Consensus MFE	-11.73
Energy contribution	-11.46
Covariance contribution	-0.27
Combinations/Pair	1.17
Mean z-score	-1.56
Structure conservation index	0.61
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.35
SVM RNA-class probability	0.654832
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 6397743 68 - 22422827
------UCAGUGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUACGGCCGAAG
------...(((....)))..(((((((.((((((.........)))))).))))(((((.....)))))))). ( -18.00, z-score =  -1.79, R)
>droPer1.super_18 1817008 71 - 1952607
--GUAGUCGACGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUGGGCCGGGG-
--...((((....))))...(..(((((.((((((.........)))))).))))((((......)))))..)- ( -19.80, z-score =  -1.52, R)
>droEre2.scaffold_4690 15338004 74 - 18748788
GCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUACGGCCGGCG
((.((((......)))).......((((.((((((.........)))))).))))(((((.....))))).)). ( -22.30, z-score =  -1.87, R)
>droYak2.chrX 2369580 74 - 21770863
GCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUACGGCCGGAG
...((((......))))....(((((((.((((((.........)))))).))))(((((.....)))))))). ( -21.20, z-score =  -1.91, R)
>droSec1.super_4 5784902 74 + 6179234
GCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUAUAUUUACGUGGCUGUUAUACGGCCGGAG
...((((......))))....(((((((.((((((.........)))))).))))(((((.....)))))))). ( -19.30, z-score =  -1.27, R)
>droSim1.chrX 5014711 74 - 17042790
GCAGUCGCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUACGGCCGGAG
...((((......))))....(((((((.((((((.........)))))).))))(((((.....)))))))). ( -21.20, z-score =  -1.91, R)
>droVir3.scaffold_12928 7695159 68 - 7717345
------UCGCCGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUGCGUGGCGGCAAUGCGUUUGGGA
------..((((((((......))((((.((((((.........)))))).))))))))))............. ( -20.00, z-score =  -1.05, R)
>droGri2.scaffold_14853 669511 61 + 10151454
------UCACCGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUGCGUGGCAGCAAUGCG-------
------.................(((((.((((((.........)))))).)))))(((....))).------- ( -15.80, z-score =  -1.24, R)
>droWil1.scaffold_181150 140677 65 + 4952429
--GUGCUCGUUGUCGGCAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUAAUACG-------
--((((.((....))))))...((((((.((((((.........)))))).))))))..........------- ( -16.50, z-score =  -1.50, R)
>consensus
__AGUCUCAGAGUCGACAUAUUUCACGUUGAUGUAUGGUUUAAUUACAUUUACGUGGCUGUUAUACGGCCGGAG
......................((((((.((((((.........)))))).))))))................. (-11.73 = -11.46 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:50 2011