| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,394,160 – 6,394,268 |
| Length | 108 |
| Max. P | 0.726536 |
| Location | 6,394,160 – 6,394,268 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.71 |
| Shannon entropy | 0.30173 |
| G+C content | 0.43624 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -19.70 |
| Energy contribution | -20.38 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6394160 108 - 22422827 AGGUGGAUGGUCGUCGGCU---ACCUUGAAGUGGAUUUUUUAGCUACGC-CAAUAUAGUAAACAUUAUCC--------AAUUGCCACCACUGACCUCCAAUUGGAGCUCCGGUUGGAGCU .(((((.(((..((..(((---(..(((..((((.........))))..-)))..))))..)).....))--------)....)))))......((((((((((....)))))))))).. ( -34.00, z-score = -1.77, R) >droSim1.chrX 5011787 110 - 17042790 AGGUAGAUGUUCAGCUACUUGAAGAUUGGAUUGGAUUUUUUAGCUAAUC-CAAUAUAGC-AACAUUAUCC--------AAUUGCCACCACUGACCUCCAAUUGGAGCUCCAGUUGGAGCU .(((.(((.(((((....))))).))).((((((((......((((...-.....))))-......))))--------))))))).........((((((((((....)))))))))).. ( -34.40, z-score = -3.13, R) >droSec1.super_4 5781454 110 + 6179234 AGGUGGAUGUUCAGCUACUUGAAGAUUGGAUUGGAUUUUUUAGCUAAGC-CAAUAUAGC-AACAUUAUCC--------AAUUGCCACCACUGACCUCCAAUUGGAGCUCCACUUGGAGCU .(((((((.(((((....))))).))..((((((((......((((...-.....))))-......))))--------)))).)))))......((((((.(((....))).)))))).. ( -34.90, z-score = -2.88, R) >droYak2.chrX 2366120 110 - 21770863 ACUAGGAUGUUCAGCUAC-------UUGAAGUGGA-UUUUUAGCUACUC-CAAUGCGGU-AACAUUAUCCAAUUGCCAAAUUGCCAGCACUGACCUCCAAUUGGAGCUCCAGUUGGAGCU ..((((((((((.((...-------(((.(((((.-.......))))).-))).)).).-))))))...(((((....)))))......)))..((((((((((....)))))))))).. ( -29.70, z-score = -0.99, R) >droEre2.scaffold_4690 15334644 103 - 18748788 AGUUGGAUGCUCAGCUAC-------UUGAAGUGGA-UUUUUGGCUACUUGCAAUAUAGU-UACAUUAUCC--------AAUUGCCACCACUGACCUGCAAUUGGAGCUCCAAUUGGAGCU .....((((...(((((.-------(((((((((.-.......)))))).)))..))))-).)))).(((--------((((((............)))))))))(((((....))))). ( -29.50, z-score = -1.65, R) >consensus AGGUGGAUGUUCAGCUACU___A__UUGAAGUGGAUUUUUUAGCUACUC_CAAUAUAGU_AACAUUAUCC________AAUUGCCACCACUGACCUCCAAUUGGAGCUCCAGUUGGAGCU .(((((....((((...........))))...((((......((((.........)))).......)))).............)))))......((((((((((....)))))))))).. (-19.70 = -20.38 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:47 2011