| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,378,688 – 6,378,749 |
| Length | 61 |
| Max. P | 0.997903 |
| Location | 6,378,688 – 6,378,749 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 73.61 |
| Shannon entropy | 0.47814 |
| G+C content | 0.33224 |
| Mean single sequence MFE | -13.44 |
| Consensus MFE | -8.32 |
| Energy contribution | -10.28 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.997903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6378688 61 + 22422827 GAAUGAGUAAUAUUGCAUUUUAUUACCCAUACGCCCUGUGUAUUUUCACACAGCGUAGCAU ...((.((((((........)))))).))(((((..((((......))))..))))).... ( -15.30, z-score = -3.62, R) >droAna3.scaffold_13335 1349286 51 - 3335858 GUAUGAGUGAUAAUAUA-------ACUCAUACGCCAUGUUGUACCUGAAAAAGUGAAU--- ((((((((.........-------))))))))..........................--- ( -10.10, z-score = -2.65, R) >droEre2.scaffold_4690 15319187 61 + 18748788 GAAUGAGUAAUAUUACAUUUUAUUAAGCAUACGCACUGUGUUUUAUCACUUAGAGUAGGAU ...(((((.(((..((((........((....))...))))..))).)))))......... ( -7.00, z-score = 0.26, R) >droYak2.chrX 2350515 61 + 21770863 GUAUGAGUAAUAUUACAUUUUAUAACUCAUACGCACUGUGUUUUAUCACAUGGAGUAGCAU ((((((((.(((........))).))))))))((.((((((......)))))).))..... ( -16.10, z-score = -3.17, R) >droSec1.super_4 5766275 61 - 6179234 GAAUGAGUAAUAUUGCAUUUUAUUACUCAUACGCCCUGUGUAUUUUCACACAGUGUAGCAU (.((((((((((........)))))))))).)((.((((((......)))))).))..... ( -18.70, z-score = -4.47, R) >consensus GAAUGAGUAAUAUUACAUUUUAUUACUCAUACGCCCUGUGUUUUAUCACACAGAGUAGCAU (.((((((((((........)))))))))).)((.((((((......)))))).))..... ( -8.32 = -10.28 + 1.96)
| Location | 6,378,688 – 6,378,749 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 73.61 |
| Shannon entropy | 0.47814 |
| G+C content | 0.33224 |
| Mean single sequence MFE | -13.24 |
| Consensus MFE | -6.78 |
| Energy contribution | -9.26 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6378688 61 - 22422827 AUGCUACGCUGUGUGAAAAUACACAGGGCGUAUGGGUAAUAAAAUGCAAUAUUACUCAUUC ....((((((.((((......)))).))))))(((((((((........)))))))))... ( -21.70, z-score = -5.10, R) >droAna3.scaffold_13335 1349286 51 + 3335858 ---AUUCACUUUUUCAGGUACAACAUGGCGUAUGAGU-------UAUAUUAUCACUCAUAC ---..........................((((((((-------.........)))))))) ( -7.40, z-score = -1.63, R) >droEre2.scaffold_4690 15319187 61 - 18748788 AUCCUACUCUAAGUGAUAAAACACAGUGCGUAUGCUUAAUAAAAUGUAAUAUUACUCAUUC ...........(((((((....(((.....(((.....)))...)))..)))))))..... ( -4.50, z-score = 0.30, R) >droYak2.chrX 2350515 61 - 21770863 AUGCUACUCCAUGUGAUAAAACACAGUGCGUAUGAGUUAUAAAAUGUAAUAUUACUCAUAC ..((.(((...(((......))).)))))((((((((.(((........))).)))))))) ( -12.90, z-score = -2.03, R) >droSec1.super_4 5766275 61 + 6179234 AUGCUACACUGUGUGAAAAUACACAGGGCGUAUGAGUAAUAAAAUGCAAUAUUACUCAUUC (((((...(((((((....))))))))))))((((((((((........)))))))))).. ( -19.70, z-score = -4.56, R) >consensus AUGCUACACUAUGUGAAAAAACACAGGGCGUAUGAGUAAUAAAAUGUAAUAUUACUCAUUC ....(((.((.((((......)))).)).)))(((((((((........)))))))))... ( -6.78 = -9.26 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:45 2011