| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,368,784 – 6,368,881 |
| Length | 97 |
| Max. P | 0.978611 |
| Location | 6,368,784 – 6,368,881 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 72.36 |
| Shannon entropy | 0.50039 |
| G+C content | 0.63497 |
| Mean single sequence MFE | -44.07 |
| Consensus MFE | -30.42 |
| Energy contribution | -30.57 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6368784 97 + 22422827 -------GCAAUCUGUUCUCCGUCUCAGCCCCGCUGACCCCCA-GCUCUUUGUGGGACGCGGGGUCAGCGGG----CGGUGAAGGGGCAAGGUCAAGGAGCAUGGAGAG -------....(((((.((((...(((.((((((((((((((.-.(((.....)))..).))))))))))))----.).)))...(((...)))..)))).)))))... ( -45.70, z-score = -1.80, R) >droSim1.chrX 4987145 97 + 17042790 -------GCAAUCUGUUCUUCGUCUCAGCCCCGCUGACCCCCA-GGCCUUUGUGGGGCGCGGGGUCAGCGGG----CGGUGAAGGGGCAAGGUCAAGGAGCAUGGAGAG -------....(((((.((((...(((.(((((((((((((..-.((((.....))))..))))))))))))----.).)))...(((...)))..)))).)))))... ( -45.30, z-score = -1.37, R) >droSec1.super_4 5759131 97 - 6179234 -------GCAAUCUGUUCUCCGUCUCAGCCCCGCUGACCCUCA-GGCCUUUGUGGGGCGCGGGGUCAGCGGG----CGGUGAAGGGGCAAGGUCAAGGAGCAUGGAGAG -------....(((((.((((...(((.(((((((((((((..-.((((.....))))..))))))))))))----.).)))...(((...)))..)))).)))))... ( -46.30, z-score = -1.68, R) >droYak2.chrX 2343653 109 + 21770863 GCAAUCUGUUCUCUGUUCUCCGUCUCAGCCCCGUUGACCCCCAAGCCCUUCGUUGGGCGCUGUGACAAGGGGGGCAAGGGGAAGGGGCAAGGUCAAGGAGCAUGGAGAG .........(((((((.(((((((((..((((.(((.(((((..((((......)))).((......))))))))))))))..)))))........)))).))))))). ( -49.00, z-score = -1.66, R) >droEre2.scaffold_4690 15312080 97 + 18748788 -------GCAAUCUGUUCUCCGCCACAACCCCGUUGACCCCCA-GCCCUUUGAUGGGCGCGGGGGCAGCGGG----AGGGGAAGGGGCAAGGUCAAGGAGCAUGGAGAG -------.........((((((((.(..((((((((.(((((.-((((......))))..))))))))))))----.)..)....)))..(.((...)).)..))))). ( -48.00, z-score = -2.17, R) >droAna3.scaffold_13335 1342163 83 - 3335858 ------GACAGCUUGUCUUGUCGCUCU-UUCGGUUGGCAUUAAGGCUGUCUCUG------UCUGUCAGCCGG-----------ACGGCAAGGUCAAGGAGGUGGGAG-- ------.((..((((((((((((....-(((((((((((....(((.......)------))))))))))))-----------))))))))).))))...)).....-- ( -30.10, z-score = -1.24, R) >consensus _______GCAAUCUGUUCUCCGUCUCAGCCCCGCUGACCCCCA_GCCCUUUGUGGGGCGCGGGGUCAGCGGG____CGGUGAAGGGGCAAGGUCAAGGAGCAUGGAGAG ................((((((((((...((((((((((((...(.((......)).)..)))))))))))).............(((...)))...))).))))))). (-30.42 = -30.57 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:42 2011