| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,368,485 – 6,368,538 |
| Length | 53 |
| Max. P | 0.995773 |
| Location | 6,368,485 – 6,368,538 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 65.55 |
| Shannon entropy | 0.56800 |
| G+C content | 0.35473 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -8.44 |
| Energy contribution | -8.78 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.84 |
| SVM RNA-class probability | 0.995773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6368485 53 - 22422827 --------AAACAGUCAGCGGGAUUUGAAUGUUUUAAGUUUGUUGCUGGCAUAAUUGACAU --------.....(((((((((((((((.....)))))))..))))))))........... ( -12.80, z-score = -1.87, R) >droSim1.chrX 4986850 53 - 17042790 --------AAACAGUCAGCAGGAUUUGAAUGUUUUAAGUUUGUUGCUGGCAUAAUUGACAU --------.....(((((((((((((((.....)))))))..))))))))........... ( -13.60, z-score = -2.07, R) >droSec1.super_4 5758836 53 + 6179234 --------AAACAGUCAGCAGGAUUUGAAUGUUUUAAGUUUGUUGCUGGCAUAAUUGACAU --------.....(((((((((((((((.....)))))))..))))))))........... ( -13.60, z-score = -2.07, R) >droYak2.chrX 2343359 53 - 21770863 --------AAACAGUCAGCGGGAUUUGAAUGUUUUAAGUUUGUCGCUGGCAUAAUUGAAAU --------.....(((((((((((((((.....)))))))..))))))))........... ( -14.80, z-score = -3.00, R) >dp4.chrXL_group1e 2895032 56 - 12523060 AAACUAACAAACUGUUGGCCCAAUUUGAUGCCUUUCGGCAUUUUGUCAAAUGAAGU----- ...(((((.....)))))....((((((((((....)))).....)))))).....----- ( -10.80, z-score = -0.88, R) >droPer1.super_18 1786769 56 - 1952607 AAACUAACAAACUGUUGGCCCAAUUUGAUGCCUUUCGGCAUUUUGUUAAAUGAAGU----- ...(((((.....)))))...(((..((((((....))))))..))).........----- ( -12.00, z-score = -1.65, R) >consensus ________AAACAGUCAGCAGGAUUUGAAUGUUUUAAGUUUGUUGCUGGCAUAAUUGACAU .............(((((((((((((((.....)))))))..))))))))........... ( -8.44 = -8.78 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:42 2011