| Sequence ID | dm3.chrX |
|---|---|
| Location | 6,364,233 – 6,364,333 |
| Length | 100 |
| Max. P | 0.588905 |
| Location | 6,364,233 – 6,364,333 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.02 |
| Shannon entropy | 0.31872 |
| G+C content | 0.52218 |
| Mean single sequence MFE | -18.67 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 6364233 100 - 22422827 CCUAAAAACUGACCAACUGACCAAUGUCAGACCACCGGACGUGUGCACUUAACCCGUUCUUGGCCAACUGUGCCAUUAUCCACCCUCUCAUCUACCCAUC-------- .........(((....(((((....)))))......(((.(((.((((.....(((....)))......)))))))..)))......)))..........-------- ( -18.00, z-score = -1.67, R) >droSim1.chrX_random 2062528 90 - 5698898 CCUAAAAACUGACCAACUGACCAAUGUCAGAC--CCGGACGUGUGCACUUAACCCGUUCUUGGCCAACUGGCCCAUUAUCCACCCACCCAUC---------------- ................(((((....)))))..--..(((((.((.......)).)))))..((((....))))...................---------------- ( -18.70, z-score = -1.72, R) >droSec1.super_4 5754317 90 + 6179234 CCUAAAAACUGACCAACUGACCAAUGUCAGAC--CCGGACGUGUGCACUAAAUCCGUUCUUGGCCAACUGGCCCAUUAUCCACCCACCCAUC---------------- ................(((((....)))))..--..(((((..(.......)..)))))..((((....))))...................---------------- ( -17.50, z-score = -1.24, R) >droYak2.chrX 2340396 104 - 21770863 -CCUAAAACUGACCAUCUGACC-AUGUUAGAG--CCGGACGUGUGCACUUAACCCGUUCUUGGCCAACUCGGCCAUUAUCCACCCACUAACCAACACCCACUAGCCAG -.......(((....((((((.-..))))))(--(.(((((.((.......)).))))).(((((.....)))))............................))))) ( -20.60, z-score = -1.51, R) >droEre2.scaffold_4690 15308713 91 - 18748788 CCUAAAAACUGACCAUCUGACC-AUGUCAGAU--CCGGACGUGUGCACUUAACCCGUUCCUAGUCAACUGGGCCAUUAUCCAUCCAC-CACCCAC------------- .........((((.(((((((.-..)))))))--..(((((.((.......)).)))))...))))..((((...............-..)))).------------- ( -18.53, z-score = -1.19, R) >consensus CCUAAAAACUGACCAACUGACCAAUGUCAGAC__CCGGACGUGUGCACUUAACCCGUUCUUGGCCAACUGGGCCAUUAUCCACCCACCCAUC_AC_____________ ................(((((....)))))......(((((.((.......)).))))).(((((.....)))))................................. (-13.30 = -13.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:20:41 2011