| Sequence ID | dm3.chr2L |
|---|---|
| Location | 902,180 – 902,276 |
| Length | 96 |
| Max. P | 0.913419 |
| Location | 902,180 – 902,276 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 92.01 |
| Shannon entropy | 0.15702 |
| G+C content | 0.35172 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -15.35 |
| Energy contribution | -14.93 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 902180 96 - 23011544 UCCCAUUUGAUUUCAAAUUCACCUGCGGUCGUGUGCGCCCUCGUUGACCGCAAAUUUCUAAUAACAAUUUGUAAUUGCCAUAAAUUAAAUCACUUU .......((((((..........((((((((...(((....))))))))))).............(((((((.......))))))))))))).... ( -17.10, z-score = -1.99, R) >droSim1.chr2L 890810 96 - 22036055 UCCCAUUUGAUUUUAUAUUCACCUGCGGUCGUGUGCGCACUCGUUGACCGCAAAUUUCUAAUAACAAUUUGUAAUUGCCAUAAAUUAAAUCACUUU .......((((((..........((((((((...(((....))))))))))).............(((((((.......))))))))))))).... ( -17.10, z-score = -1.70, R) >droSec1.super_14 873167 96 - 2068291 UCCCAUUUGAUUUUAAAUUCACCUGCGGUCGUGUGCGCACUCGUUGACCGCAAAUUUCUAAUAACAAUUUGUAAUUGCCAUAAAUUAAAUCACUUU .......((((((..........((((((((...(((....))))))))))).............(((((((.......))))))))))))).... ( -17.10, z-score = -1.67, R) >droYak2.chr2L 888091 96 - 22324452 UCCCAUUUGAUUUUAAAUUCACCUGCGGUUGUUUGCGCACUCGCUGACCGCAAAUUUCUAAUAACAAUUUGUAAUUGCCAUAAAUUAAAUCACUUU .......((((((..........(((((((....(((....))).))))))).............(((((((.......))))))))))))).... ( -16.40, z-score = -1.77, R) >droEre2.scaffold_4929 964208 96 - 26641161 UCCCAUUUGAUUUGAAAUUCACCUGCGGUCGUGUGCGCACUCGUUGACCGCAAAUUUCUAAUAACAAUUUGUAAUUGCCAUAAAUUAAAUCACUUU .......((((((((((((....((((((((...(((....))))))))))))))))).......(((((((.......))))))))))))).... ( -20.10, z-score = -2.33, R) >droAna3.scaffold_12916 2622373 91 - 16180835 UCCCAUUUGAUUUUUAAUUUGGCUGCGGUUAU----GGACUCGAUGACCGCAAAUUUCUAAUAACAACUUGUAAUUA-CAUAAAUUGAAUCUCUUU ........((..(((((((((..(((((((((----.(...).)))))))))......((((.((.....)).))))-..)))))))))..))... ( -18.80, z-score = -2.88, R) >consensus UCCCAUUUGAUUUUAAAUUCACCUGCGGUCGUGUGCGCACUCGUUGACCGCAAAUUUCUAAUAACAAUUUGUAAUUGCCAUAAAUUAAAUCACUUU ....(((((((((..........((((((((...(((....)))))))))))......((((.((.....)).))))....)))))))))...... (-15.35 = -14.93 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:18 2011